Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | QM970_RS13125 | Genome accession | NZ_CP125980 |
| Coordinates | 2439620..2440030 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain ZKY03 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2434986..2462916 | 2439620..2440030 | within | 0 |
Gene organization within MGE regions
Location: 2434986..2462916
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QM970_RS13100 (QM970_13095) | yqeF | 2435153..2435884 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| QM970_RS13105 (QM970_13100) | cwlH | 2436136..2436888 (-) | 753 | WP_264379321.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| QM970_RS13110 (QM970_13105) | yqeD | 2437075..2437701 (+) | 627 | WP_014480319.1 | TVP38/TMEM64 family protein | - |
| QM970_RS13115 (QM970_13110) | gnd | 2437720..2438613 (-) | 894 | WP_069837643.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| QM970_RS13120 (QM970_13115) | yqeB | 2438865..2439587 (+) | 723 | WP_014480321.1 | hypothetical protein | - |
| QM970_RS13125 (QM970_13120) | nucA/comI | 2439620..2440030 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| QM970_RS13130 (QM970_13125) | sigK | 2440226..2440954 (+) | 729 | WP_013308023.1 | RNA polymerase sporulation sigma factor SigK | - |
| QM970_RS13135 (QM970_13130) | - | 2440954..2441052 (+) | 99 | WP_031600702.1 | hypothetical protein | - |
| QM970_RS13140 (QM970_13135) | - | 2441049..2441261 (-) | 213 | Protein_2539 | recombinase family protein | - |
| QM970_RS13145 (QM970_13140) | fumC | 2441480..2442868 (-) | 1389 | WP_014480325.1 | class II fumarate hydratase | - |
| QM970_RS13150 (QM970_13145) | - | 2443035..2443925 (+) | 891 | WP_014480326.1 | LysR family transcriptional regulator | - |
| QM970_RS13155 (QM970_13150) | - | 2444867..2445262 (+) | 396 | WP_046160622.1 | VOC family protein | - |
| QM970_RS13160 (QM970_13160) | - | 2446002..2447129 (-) | 1128 | WP_014480328.1 | Rap family tetratricopeptide repeat protein | - |
| QM970_RS13165 | - | 2447311..2448144 (+) | 834 | Protein_2544 | ribonuclease YeeF family protein | - |
| QM970_RS13170 | - | 2448566..2449237 (+) | 672 | WP_228224803.1 | hypothetical protein | - |
| QM970_RS13175 (QM970_13170) | - | 2449251..2449538 (+) | 288 | WP_014480331.1 | hypothetical protein | - |
| QM970_RS13180 (QM970_13175) | - | 2449941..2450381 (+) | 441 | WP_014480332.1 | SMI1/KNR4 family protein | - |
| QM970_RS13185 (QM970_13180) | - | 2450480..2450932 (+) | 453 | WP_014480333.1 | SMI1/KNR4 family protein | - |
| QM970_RS13190 (QM970_13185) | cdiI | 2451029..2451388 (+) | 360 | WP_014480334.1 | ribonuclease toxin immunity protein CdiI | - |
| QM970_RS13195 (QM970_13190) | - | 2451493..2451972 (+) | 480 | WP_224588637.1 | hypothetical protein | - |
| QM970_RS13200 (QM970_13195) | - | 2452280..2452441 (-) | 162 | WP_157671733.1 | hypothetical protein | - |
| QM970_RS13205 (QM970_13200) | - | 2452572..2452805 (+) | 234 | WP_224588641.1 | hypothetical protein | - |
| QM970_RS13210 (QM970_13205) | atxG | 2453073..2453650 (+) | 578 | Protein_2553 | suppressor of fused domain protein | - |
| QM970_RS13215 (QM970_13210) | - | 2453760..2454050 (+) | 291 | WP_014480337.1 | contact-dependent growth inhibition system immunity protein | - |
| QM970_RS13220 (QM970_13215) | istA | 2454891..2456438 (+) | 1548 | WP_014480339.1 | IS21 family transposase | - |
| QM970_RS13225 (QM970_13220) | istB | 2456435..2457193 (+) | 759 | WP_014479891.1 | IS21-like element helper ATPase IstB | - |
| QM970_RS13230 | - | 2457445..2457611 (-) | 167 | Protein_2557 | peptidoglycan-binding domain-containing protein | - |
| QM970_RS13235 (QM970_13230) | - | 2457786..2457872 (+) | 87 | WP_072592549.1 | putative holin-like toxin | - |
| QM970_RS13240 | - | 2458159..2458634 (-) | 476 | Protein_2559 | phage tail tube protein | - |
| QM970_RS13245 (QM970_13245) | terS | 2458594..2459158 (-) | 565 | Protein_2560 | phage terminase small subunit | - |
| QM970_RS13250 (QM970_13250) | - | 2459285..2459590 (+) | 306 | WP_264379322.1 | hypothetical protein | - |
| QM970_RS13255 (QM970_13260) | - | 2459983..2460462 (-) | 480 | WP_014480344.1 | hypothetical protein | - |
| QM970_RS13260 (QM970_13265) | - | 2461079..2461345 (+) | 267 | WP_033881358.1 | hypothetical protein | - |
| QM970_RS13265 (QM970_13270) | - | 2461484..2461636 (-) | 153 | WP_049832653.1 | XtrA/YqaO family protein | - |
| QM970_RS13270 (QM970_13275) | - | 2461719..2461841 (-) | 123 | Protein_2565 | RusA family crossover junction endodeoxyribonuclease | - |
| QM970_RS13275 (QM970_13280) | - | 2461804..2462052 (-) | 249 | Protein_2566 | hypothetical protein | - |
| QM970_RS13280 (QM970_13285) | - | 2462197..2462427 (-) | 231 | WP_224588644.1 | hypothetical protein | - |
| QM970_RS13285 (QM970_13290) | - | 2462736..2462916 (-) | 181 | Protein_2568 | hypothetical protein | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=833844 QM970_RS13125 WP_009967785.1 2439620..2440030(-) (nucA/comI) [Bacillus subtilis strain ZKY03]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=833844 QM970_RS13125 WP_009967785.1 2439620..2440030(-) (nucA/comI) [Bacillus subtilis strain ZKY03]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |