Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QM970_RS12345 Genome accession   NZ_CP125980
Coordinates   2306288..2307091 (-) Length   267 a.a.
NCBI ID   WP_410490192.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZKY03     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2301288..2312091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM970_RS12320 (QM970_12315) glpQB 2302426..2303157 (-) 732 WP_043857797.1 glycerophosphodiester phosphodiesterase -
  QM970_RS12325 (QM970_12320) yqiI 2303236..2303856 (-) 621 WP_087614617.1 N-acetylmuramoyl-L-alanine amidase -
  QM970_RS12330 (QM970_12325) - 2303876..2304172 (-) 297 WP_014480225.1 hypothetical protein -
  QM970_RS12335 (QM970_12330) - 2304480..2304632 (+) 153 WP_121590947.1 hypothetical protein -
  QM970_RS12340 (QM970_12335) yqiG 2304705..2305823 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  QM970_RS12345 (QM970_12340) spo0A 2306288..2307091 (-) 804 WP_410490192.1 sporulation transcription factor Spo0A Regulator
  QM970_RS12350 (QM970_12345) spoIVB 2307367..2308647 (-) 1281 WP_014480228.1 SpoIVB peptidase -
  QM970_RS12355 (QM970_12350) recN 2308822..2310552 (-) 1731 WP_014480229.1 DNA repair protein RecN Machinery gene
  QM970_RS12360 (QM970_12355) argR 2310589..2311038 (-) 450 WP_003230265.1 arginine repressor ArgR -
  QM970_RS12365 (QM970_12360) yqxC 2311136..2311981 (-) 846 WP_031600677.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29692.13 Da        Isoelectric Point: 6.3913

>NTDB_id=833829 QM970_RS12345 WP_410490192.1 2306288..2307091(-) (spo0A) [Bacillus subtilis strain ZKY03]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERANRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=833829 QM970_RS12345 WP_410490192.1 2306288..2307091(-) (spo0A) [Bacillus subtilis strain ZKY03]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGAACCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996