Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   SR852_RS00480 Genome accession   NZ_CP140161
Coordinates   94244..94672 (-) Length   142 a.a.
NCBI ID   WP_003179050.1    Uniprot ID   Q65N91
Organism   Bacillus licheniformis strain ATCC 14580     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 89244..99672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR852_RS00470 (SR852_00470) - 89479..91299 (-) 1821 WP_011197562.1 APC family permease -
  SR852_RS00475 (SR852_00475) - 91987..94170 (-) 2184 WP_025805960.1 DNA topoisomerase III -
  SR852_RS00480 (SR852_00480) lrpC 94244..94672 (-) 429 WP_003179050.1 Lrp/AsnC family transcriptional regulator Machinery gene
  SR852_RS00485 (SR852_00485) - 94790..95200 (+) 411 WP_003179047.1 carboxymuconolactone decarboxylase family protein -
  SR852_RS00490 (SR852_00490) - 95284..95577 (+) 294 WP_003179046.1 DUF3817 domain-containing protein -
  SR852_RS00495 (SR852_00495) - 95609..96550 (-) 942 WP_003179044.1 LCP family protein -
  SR852_RS00500 (SR852_00500) - 96715..97524 (-) 810 WP_003179042.1 lipid II flippase Amj family protein -
  SR852_RS00505 (SR852_00505) - 97977..98399 (-) 423 WP_003179040.1 pyridoxamine 5'-phosphate oxidase family protein -
  SR852_RS00510 (SR852_00510) - 98485..98868 (+) 384 WP_003179038.1 DUF2283 domain-containing protein -
  SR852_RS00515 (SR852_00515) - 98885..99388 (-) 504 WP_003179036.1 D-lyxose/D-mannose family sugar isomerase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16264.89 Da        Isoelectric Point: 7.7014

>NTDB_id=833826 SR852_RS00480 WP_003179050.1 94244..94672(-) (lrpC) [Bacillus licheniformis strain ATCC 14580]
MKIDDLDFKIIAELKKDSRLSMRELGRKISLSAPSVTERVRRLESFGVIKKYTLDIDYQKVGLPVSCIIEATVKNGEYER
FKAYIERLPNIEFCYRIAGAACYMLKINAESLAKIEAFINETSPYAQTVTHVIFSEIETKES

Nucleotide


Download         Length: 429 bp        

>NTDB_id=833826 SR852_RS00480 WP_003179050.1 94244..94672(-) (lrpC) [Bacillus licheniformis strain ATCC 14580]
ATGAAAATTGATGATCTCGATTTTAAAATCATAGCCGAATTAAAGAAAGACAGCCGTTTATCGATGCGGGAGCTGGGCAG
GAAGATCAGCCTTTCGGCACCGTCTGTGACCGAAAGAGTCAGGCGGCTCGAATCGTTCGGCGTCATAAAAAAATATACGC
TGGACATCGATTACCAAAAGGTCGGTCTTCCCGTTTCCTGCATCATTGAAGCAACGGTGAAAAACGGGGAATACGAGAGG
TTTAAAGCGTATATCGAACGCCTCCCGAACATTGAATTCTGCTACCGGATCGCGGGAGCTGCCTGCTATATGCTGAAAAT
CAATGCAGAGAGCCTGGCGAAGATCGAAGCGTTTATCAATGAAACGTCTCCATATGCCCAAACCGTGACACACGTGATTT
TTTCGGAAATTGAAACAAAGGAATCGTGA

Domains

Predicted by InterProScan.

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65N91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80

98.592

0.789