Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   U1R71_RS21890 Genome accession   NZ_CP140123
Coordinates   4094296..4095144 (-) Length   282 a.a.
NCBI ID   WP_003226832.1    Uniprot ID   P26497
Organism   Bacillus subtilis strain SJTU2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4089296..4100144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS21870 (U1R71_21870) yyaE 4089809..4091812 (-) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  U1R71_RS21875 (U1R71_21875) yyzM 4091863..4092069 (-) 207 WP_003226838.1 DUF951 domain-containing protein -
  U1R71_RS21880 (U1R71_21880) - 4092163..4093179 (-) 1017 WP_010886647.1 membrane protein -
  U1R71_RS21885 (U1R71_21885) yyaC 4093639..4094256 (+) 618 WP_003243890.1 spore protease YyaC -
  U1R71_RS21890 (U1R71_21890) spo0J 4094296..4095144 (-) 849 WP_003226832.1 stage 0 sporulation protein Spo0J Regulator
  U1R71_RS21895 (U1R71_21895) soj 4095137..4095898 (-) 762 WP_003219244.1 sporulation initiation inhibitor protein Soj -
  U1R71_RS21900 (U1R71_21900) yyaB 4096146..4096586 (+) 441 WP_014481510.1 PH domain-containing protein -
  U1R71_RS21905 (U1R71_21905) noc 4096637..4097488 (-) 852 WP_003226829.1 nucleoid occlusion protein -
  U1R71_RS21910 (U1R71_21910) rsmG 4097610..4098329 (-) 720 WP_014481512.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 32210.16 Da        Isoelectric Point: 8.3881

>NTDB_id=833825 U1R71_RS21890 WP_003226832.1 4094296..4095144(-) (spo0J) [Bacillus subtilis strain SJTU2]
MAKGLGKGINALFNQVDLSEETVEEIKIADLRPNPYQPRKHFDDEALAELKESVLQHGILQPLIVRKSLKGYDIVAGERR
FRAAKLAGLDTVPAIVRELSEALMREIALLENLQREDLSPLEEAQAYDSLLKHLDLTQEQLAKRLGKSRPHIANHLRLLT
LPENIQQLIAEGTLSMGHGRTLLGLKNKNKLEPLVQKVIAEQLNVRQLEQLIQQLNQNVPRETKKKEPVKDAVLKERESY
LQNYFGTTVNIKRQKKKGKIEIEFFSNEDLDRILELLSERES

Nucleotide


Download         Length: 849 bp        

>NTDB_id=833825 U1R71_RS21890 WP_003226832.1 4094296..4095144(-) (spo0J) [Bacillus subtilis strain SJTU2]
ATGGCTAAAGGCCTTGGAAAAGGGATTAATGCGTTATTTAATCAGGTAGATTTGTCTGAAGAGACAGTTGAAGAAATTAA
AATTGCCGATTTACGCCCTAATCCTTATCAGCCAAGAAAACACTTTGATGACGAGGCATTAGCTGAACTAAAAGAATCTG
TGCTGCAGCATGGCATTCTTCAGCCGCTTATCGTCAGAAAATCTTTAAAAGGCTATGATATTGTTGCGGGTGAACGGCGT
TTTCGAGCGGCAAAGCTGGCAGGTTTAGATACAGTTCCGGCCATTGTCCGTGAATTATCAGAGGCGTTAATGAGGGAAAT
TGCTTTATTAGAAAATCTTCAGCGTGAAGATTTATCTCCGCTTGAAGAGGCTCAGGCATATGACTCCTTGTTGAAACACT
TAGATCTCACACAAGAGCAGCTTGCCAAACGTCTTGGGAAAAGCAGACCGCATATTGCGAATCATTTAAGACTGCTGACA
CTGCCAGAAAATATTCAGCAGCTTATTGCCGAAGGTACGCTTTCTATGGGACATGGACGCACGCTTCTTGGCTTAAAAAA
CAAAAATAAGCTTGAACCGCTGGTACAAAAAGTGATTGCGGAGCAGCTCAATGTTCGCCAGCTTGAGCAGCTGATTCAGC
AGTTGAATCAGAATGTTCCACGTGAAACAAAGAAAAAAGAACCTGTGAAAGATGCGGTTCTAAAAGAGCGAGAATCCTAT
CTCCAAAATTATTTTGGAACAACAGTTAATATTAAAAGACAGAAGAAAAAAGGCAAAATCGAAATTGAATTTTTCTCTAA
TGAAGACCTTGACCGGATTTTAGAGCTTTTGTCTGAACGAGAATCATAA

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(163-214)

ParB/Sulfiredoxin domain (ParB_N)

(24-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5NOC
  PDB 6SDK

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.923

92.199

0.387