Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QM970_RS08060 Genome accession   NZ_CP125980
Coordinates   1517753..1518328 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZKY03     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512753..1523328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM970_RS08030 (QM970_08030) dapD 1512941..1513651 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  QM970_RS08035 (QM970_08035) dapI 1513721..1514845 (+) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  QM970_RS08040 (QM970_08040) ykuS 1514907..1515152 (+) 246 WP_003232382.1 YkuS family protein -
  QM970_RS08045 (QM970_08045) mscT 1515189..1515992 (-) 804 WP_029317733.1 small-conductance mechanosensitive channel protein MscT -
  QM970_RS08050 (QM970_08050) ahpA 1516229..1516771 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  QM970_RS08055 (QM970_08055) ykuV 1516841..1517287 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  QM970_RS08060 (QM970_08060) rok 1517753..1518328 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  QM970_RS08065 (QM970_08065) cse15 1518369..1519334 (-) 966 WP_029317734.1 spore protein Cse15 -
  QM970_RS08070 (QM970_08070) mobA 1519471..1520070 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  QM970_RS08075 (QM970_08075) moeB 1520121..1521140 (+) 1020 WP_029317735.1 molybdopterin-synthase adenylyltransferase MoeB -
  QM970_RS08080 (QM970_08080) glp 1521158..1522450 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  QM970_RS08085 (QM970_08085) mobB 1522411..1522932 (+) 522 WP_046160345.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=833822 QM970_RS08060 WP_003232378.1 1517753..1518328(+) (rok) [Bacillus subtilis strain ZKY03]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=833822 QM970_RS08060 WP_003232378.1 1517753..1518328(+) (rok) [Bacillus subtilis strain ZKY03]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1