Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   U1R71_RS21130 Genome accession   NZ_CP140123
Coordinates   3953261..3953950 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain SJTU2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3948261..3958950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS21110 (U1R71_21110) yxeA 3949190..3949537 (-) 348 WP_003227084.1 YxeA family protein -
  U1R71_RS21115 (U1R71_21115) yxdM 3949551..3951435 (-) 1885 Protein_4101 ABC transporter permease YxdM -
  U1R71_RS21120 (U1R71_21120) tpeL 3951410..3952143 (-) 734 Protein_4102 ABC transporter ATP-binding protein -
  U1R71_RS21125 (U1R71_21125) yxdK 3952287..3953264 (-) 978 WP_014481410.1 two-component system sensor histidine kinase YxdK -
  U1R71_RS21130 (U1R71_21130) braR 3953261..3953950 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  U1R71_RS21135 (U1R71_21135) iolJ 3954058..3954930 (-) 873 WP_014481411.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  U1R71_RS21140 (U1R71_21140) iolI 3954951..3955787 (-) 837 WP_014481412.1 2-keto-myo-inositol isomerase -
  U1R71_RS21145 (U1R71_21145) iolH 3955873..3956742 (-) 870 WP_014481413.1 sugar phosphate isomerase/epimerase family protein -
  U1R71_RS21150 (U1R71_21150) iolG 3956762..3957796 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=833819 U1R71_RS21130 WP_003243527.1 3953261..3953950(-) (braR) [Bacillus subtilis strain SJTU2]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=833819 U1R71_RS21130 WP_003243527.1 3953261..3953950(-) (braR) [Bacillus subtilis strain SJTU2]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATACCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406