Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   U1R71_RS18470 Genome accession   NZ_CP140123
Coordinates   3430205..3430918 (-) Length   237 a.a.
NCBI ID   WP_014481000.1    Uniprot ID   -
Organism   Bacillus subtilis strain SJTU2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3425205..3435918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS18450 (U1R71_18450) ghrB 3425350..3426327 (+) 978 WP_072592561.1 2-hydroxyacid dehydrogenase -
  U1R71_RS18455 (U1R71_18455) psdB 3426364..3428304 (-) 1941 WP_014480997.1 lantibiotic ABC transporter permease PsdB -
  U1R71_RS18460 (U1R71_18460) psdA 3428279..3429058 (-) 780 WP_014480998.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  U1R71_RS18465 (U1R71_18465) psdS 3429141..3430211 (-) 1071 WP_014480999.1 two-component sensor histidine kinase PsdS -
  U1R71_RS18470 (U1R71_18470) braR 3430205..3430918 (-) 714 WP_014481000.1 two-component system response regulator PsdR Regulator
  U1R71_RS18475 (U1R71_18475) - 3431065..3431273 (+) 209 Protein_3574 hypothetical protein -
  U1R71_RS18480 (U1R71_18480) yvcN 3431309..3432073 (-) 765 WP_015251150.1 arylamine N-acetyltransferase family protein -
  U1R71_RS18485 (U1R71_18485) crh 3432074..3432331 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  U1R71_RS18490 (U1R71_18490) whiA 3432355..3433305 (-) 951 WP_003228147.1 DNA-binding protein WhiA -
  U1R71_RS18495 (U1R71_18495) mgfK 3433328..3434281 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  U1R71_RS18500 (U1R71_18500) rapZ 3434283..3435170 (-) 888 WP_003243903.1 RNase adapter RapZ -
  U1R71_RS18505 (U1R71_18505) rppI 3435195..3435671 (-) 477 WP_014481002.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27541.46 Da        Isoelectric Point: 4.6774

>NTDB_id=833804 U1R71_RS18470 WP_014481000.1 3430205..3430918(-) (braR) [Bacillus subtilis strain SJTU2]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RIDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSSRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLKDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=833804 U1R71_RS18470 WP_014481000.1 3430205..3430918(-) (braR) [Bacillus subtilis strain SJTU2]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGATTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGATCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGTGGGCTGACGATTTATCCTGATCAAAATGAGGCCGAATGGAACAGCTCCCGTATTCTGTTTTCCCAAAAA
GAATTTCAGCTTCTCTCTATTTTTGTGAGGGAGCATAAAAAAATTGTTTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAACCGGCTGCGGAGAAAACTGGAGAATGCCGGACTGA
AAGATTGCATTTCCACAATCAGAGGACAAGGCTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAGTGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.982

94.515

0.435