Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   U1R71_RS16210 Genome accession   NZ_CP140123
Coordinates   3016622..3017485 (-) Length   287 a.a.
NCBI ID   WP_014480705.1    Uniprot ID   Q9FAF1
Organism   Bacillus subtilis strain SJTU2     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3011622..3022485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS16185 (U1R71_16185) comA 3011931..3012575 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  U1R71_RS16190 (U1R71_16190) comP 3012656..3014617 (-) 1962 WP_276569535.1 histidine kinase Regulator
  U1R71_RS16195 (U1R71_16195) - 3014800..3015924 (+) 1125 WP_031601042.1 IS4-like element IS4Bsu1 family transposase -
  U1R71_RS16200 (U1R71_16200) - 3016054..3016383 (-) 330 WP_322808282.1 hypothetical protein -
  U1R71_RS16205 (U1R71_16205) comX 3016399..3016620 (-) 222 WP_014480704.1 competence pheromone ComX -
  U1R71_RS16210 (U1R71_16210) comQ 3016622..3017485 (-) 864 WP_014480705.1 polyprenyl synthetase family protein Regulator
  U1R71_RS16215 (U1R71_16215) degQ 3017670..3017810 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  U1R71_RS16220 (U1R71_16220) - 3018032..3018157 (+) 126 WP_003228793.1 hypothetical protein -
  U1R71_RS16225 (U1R71_16225) - 3018271..3018639 (+) 369 WP_014477834.1 hypothetical protein -
  U1R71_RS16230 (U1R71_16230) pdeH 3018615..3019844 (-) 1230 WP_014480707.1 cyclic di-GMP phosphodiesterase -
  U1R71_RS16235 (U1R71_16235) pncB 3019980..3021452 (-) 1473 WP_014480708.1 nicotinate phosphoribosyltransferase -
  U1R71_RS16240 (U1R71_16240) pncA 3021468..3022019 (-) 552 WP_014480709.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32882.57 Da        Isoelectric Point: 5.2201

>NTDB_id=833796 U1R71_RS16210 WP_014480705.1 3016622..3017485(-) (comQ) [Bacillus subtilis strain SJTU2]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=833796 U1R71_RS16210 WP_014480705.1 3016622..3017485(-) (comQ) [Bacillus subtilis strain SJTU2]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9FAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439