Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   U1R71_RS15205 Genome accession   NZ_CP140123
Coordinates   2831016..2831726 (-) Length   236 a.a.
NCBI ID   WP_014480585.1    Uniprot ID   -
Organism   Bacillus subtilis strain SJTU2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2826016..2836726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS15185 (U1R71_15185) cysK 2826068..2827003 (+) 936 WP_003229237.1 cysteine synthase A -
  U1R71_RS15190 (U1R71_15190) pepV 2827037..2828428 (-) 1392 WP_014480582.1 dipeptidase PepV -
  U1R71_RS15195 (U1R71_15195) pbuO 2828525..2829823 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  U1R71_RS15200 (U1R71_15200) ythQ 2829862..2831019 (-) 1158 WP_014480584.1 ABC transporter permease -
  U1R71_RS15205 (U1R71_15205) pptA 2831016..2831726 (-) 711 WP_014480585.1 ABC transporter ATP-binding protein Regulator
  U1R71_RS15210 (U1R71_15210) ytzE 2832016..2832237 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  U1R71_RS15215 (U1R71_15215) rsuA 2832359..2833078 (-) 720 WP_014480587.1 pseudouridine synthase -
  U1R71_RS15220 (U1R71_15220) murJ 2833147..2834781 (-) 1635 WP_014480588.1 lipid II flippase MurJ -
  U1R71_RS15225 (U1R71_15225) ytfP 2834984..2836246 (+) 1263 WP_072557170.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26545.69 Da        Isoelectric Point: 5.8478

>NTDB_id=833792 U1R71_RS15205 WP_014480585.1 2831016..2831726(-) (pptA) [Bacillus subtilis strain SJTU2]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEGREFVHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=833792 U1R71_RS15205 WP_014480585.1 2831016..2831726(-) (pptA) [Bacillus subtilis strain SJTU2]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGGGAGAGAATTTGTGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432