Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   QNH10_RS20630 Genome accession   NZ_CP125968
Coordinates   1972893..1973234 (+) Length   113 a.a.
NCBI ID   WP_347177868.1    Uniprot ID   -
Organism   Sporosarcina thermotolerans strain CCUG 53480     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1967893..1978234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH10_RS11225 (QNH10_11225) - 1968175..1969161 (+) 987 WP_283731637.1 hypothetical protein -
  QNH10_RS11230 (QNH10_11230) - 1969149..1969592 (+) 444 WP_283731638.1 hypothetical protein -
  QNH10_RS11235 (QNH10_11235) rsmD 1969589..1970137 (+) 549 WP_283731639.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QNH10_RS11240 (QNH10_11240) coaD 1970148..1970630 (+) 483 WP_283731640.1 pantetheine-phosphate adenylyltransferase -
  QNH10_RS11245 (QNH10_11245) - 1970674..1971564 (-) 891 WP_283731641.1 hypothetical protein -
  QNH10_RS20625 - 1972229..1972729 (+) 501 WP_347177867.1 hypothetical protein -
  QNH10_RS20630 sepM 1972893..1973234 (+) 342 WP_347177868.1 S16 family serine protease Regulator
  QNH10_RS11255 (QNH10_11255) - 1973247..1974224 (-) 978 WP_283731642.1 nucleotidyltransferase family protein -
  QNH10_RS11260 (QNH10_11260) - 1974187..1974492 (-) 306 WP_283731643.1 nucleotidyltransferase family protein -
  QNH10_RS11265 (QNH10_11265) - 1974619..1975152 (+) 534 WP_283731644.1 YceD family protein -
  QNH10_RS11270 (QNH10_11270) rpmF 1975180..1975353 (+) 174 WP_283731645.1 50S ribosomal protein L32 -
  QNH10_RS11275 (QNH10_11275) - 1975843..1976604 (+) 762 WP_317940146.1 enoyl-CoA hydratase/isomerase family protein -
  QNH10_RS11280 (QNH10_11280) - 1976723..1978082 (+) 1360 Protein_2198 acetyl-CoA carboxylase biotin carboxylase subunit -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12345.78 Da        Isoelectric Point: 4.2489

>NTDB_id=833792 QNH10_RS20630 WP_347177868.1 1972893..1973234(+) (sepM) [Sporosarcina thermotolerans strain CCUG 53480]
MDIHTAEIGGPSAGLMFTLQIMNQLMDEDLTKGYNIAGTGEMLADGTVGRIGGADFKVIAADREGIEIFFAPDDYLSDQV
INANPGIKTNYQEAVKMAEKNRHEDENRARPNN

Nucleotide


Download         Length: 342 bp        

>NTDB_id=833792 QNH10_RS20630 WP_347177868.1 1972893..1973234(+) (sepM) [Sporosarcina thermotolerans strain CCUG 53480]
GTGGATATCCATACAGCTGAAATAGGCGGACCTTCTGCCGGTCTAATGTTTACACTTCAAATCATGAATCAGTTGATGGA
TGAGGACTTAACAAAAGGGTACAACATTGCAGGGACCGGTGAAATGCTTGCTGACGGTACAGTTGGACGAATTGGTGGAG
CCGATTTTAAGGTGATTGCTGCTGATCGAGAAGGCATTGAAATATTCTTTGCTCCTGATGATTATTTATCTGATCAAGTG
ATCAATGCTAACCCCGGTATAAAGACGAACTATCAGGAAGCCGTAAAAATGGCCGAAAAAAATAGGCACGAAGATGAAAA
TCGTGCCCGTCCGAACAATTGA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(10-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

56

88.496

0.496