Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   U1R71_RS10685 Genome accession   NZ_CP140123
Coordinates   2014073..2015848 (-) Length   591 a.a.
NCBI ID   WP_014480018.1    Uniprot ID   -
Organism   Bacillus subtilis strain SJTU2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2009073..2020848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS10665 (U1R71_10665) desE 2009446..2010504 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  U1R71_RS10670 (U1R71_10670) desK 2010624..2011736 (+) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  U1R71_RS10675 (U1R71_10675) desR 2011755..2012354 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  U1R71_RS10680 (U1R71_10680) walN 2012962..2013825 (-) 864 WP_014480017.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  U1R71_RS10685 (U1R71_10685) recQ 2014073..2015848 (-) 1776 WP_014480018.1 DNA helicase RecQ Machinery gene
  U1R71_RS10695 (U1R71_10695) azoJ 2016414..2017040 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  U1R71_RS10700 (U1R71_10700) stpP 2017193..2017684 (-) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  U1R71_RS10705 (U1R71_10705) - 2017759..2018091 (-) 333 WP_014480020.1 hypothetical protein -
  U1R71_RS10710 (U1R71_10710) - 2018169..2018396 (+) 228 WP_014480021.1 hypothetical protein -
  U1R71_RS10715 (U1R71_10715) yocM 2018383..2018859 (-) 477 WP_014477071.1 salt stress-responsive protein YocM -
  U1R71_RS10720 (U1R71_10720) - 2018926..2019189 (+) 264 WP_004399338.1 hypothetical protein -
  U1R71_RS10725 (U1R71_10725) - 2019194..2019427 (+) 234 WP_003231251.1 hypothetical protein -
  U1R71_RS10730 (U1R71_10730) yozO 2019521..2019865 (-) 345 WP_003220141.1 PH domain-containing protein -
  U1R71_RS10735 (U1R71_10735) yozC 2020221..2020424 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67373.82 Da        Isoelectric Point: 6.2902

>NTDB_id=833754 U1R71_RS10685 WP_014480018.1 2014073..2015848(-) (recQ) [Bacillus subtilis strain SJTU2]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGMADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPNACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAADQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=833754 U1R71_RS10685 WP_014480018.1 2014073..2015848(-) (recQ) [Bacillus subtilis strain SJTU2]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTTATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACAGGATTTTCACGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAAGTCAGGGCAGGCCGGTATCATGGAGGTATGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGTTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTAATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTCTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGTAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGATC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-507)

DEAD/DEAH box helicase (DEAD)

(21-182)

HRDC domain (HRDC)

(518-583)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.154

100

0.992