Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QLH64_RS17100 Genome accession   NZ_CP125961
Coordinates   4025646..4026281 (-) Length   211 a.a.
NCBI ID   WP_162254895.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain R401     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4020646..4031281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH64_RS17065 (QLH64_17065) - 4021025..4021495 (-) 471 WP_057452019.1 (2Fe-2S)-binding protein -
  QLH64_RS17070 (QLH64_17070) murB 4021761..4022780 (-) 1020 WP_057452018.1 UDP-N-acetylmuramate dehydrogenase -
  QLH64_RS17075 (QLH64_17075) - 4022777..4023241 (-) 465 WP_057452017.1 low molecular weight protein-tyrosine-phosphatase -
  QLH64_RS17080 (QLH64_17080) kdsB 4023241..4024005 (-) 765 WP_003204286.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QLH64_RS17085 (QLH64_17085) - 4024002..4024187 (-) 186 WP_003179363.1 Trm112 family protein -
  QLH64_RS17090 (QLH64_17090) lpxK 4024211..4025221 (-) 1011 WP_057452016.1 tetraacyldisaccharide 4'-kinase -
  QLH64_RS17095 (QLH64_17095) - 4025221..4025649 (-) 429 WP_013694002.1 biopolymer transporter ExbD -
  QLH64_RS17100 (QLH64_17100) exbB 4025646..4026281 (-) 636 WP_162254895.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QLH64_RS17105 (QLH64_17105) comA 4026377..4028623 (-) 2247 WP_057452015.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QLH64_RS17110 (QLH64_17110) - 4028768..4029283 (+) 516 WP_041476071.1 DUF2062 domain-containing protein -
  QLH64_RS17115 (QLH64_17115) - 4029432..4030211 (-) 780 WP_041476072.1 ABC transporter permease -
  QLH64_RS17120 (QLH64_17120) - 4030214..4031146 (-) 933 WP_057452014.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22799.92 Da        Isoelectric Point: 8.0840

>NTDB_id=833708 QLH64_RS17100 WP_162254895.1 4025646..4026281(-) (exbB) [Pseudomonas brassicacearum strain R401]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYISTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=833708 QLH64_RS17100 WP_162254895.1 4025646..4026281(-) (exbB) [Pseudomonas brassicacearum strain R401]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGTCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGACAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGCTGCGTGCCAGTTCACCGCTGGGGGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAACGCTATAT
CAGCACCCTCGGGACCATCGCCGCCATGTCCCCACTGTTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCGTTTACCGGCTCCGGCATGACCACCAACGCCGCGGTACTGGCGGGGGGCATTTCCAAAGCCTTGATCACCACCGCC
GCCGGCCTGATGGTGGGTATTCCGGCCGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTCGACGAATTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTGGTGCAGGGGGACCGTGACGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844