Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QMY55_RS23130 Genome accession   NZ_CP125947
Coordinates   4948028..4949623 (-) Length   531 a.a.
NCBI ID   WP_283486437.1    Uniprot ID   -
Organism   Comamonas resistens strain ZM22     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4943028..4954623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY55_RS23100 (QMY55_23100) fos 4943400..4943810 (+) 411 WP_283489045.1 fosfomycin resistance glutathione transferase -
  QMY55_RS23105 (QMY55_23105) - 4943811..4944308 (-) 498 WP_283486432.1 putative toxin-antitoxin system toxin component, PIN family -
  QMY55_RS23110 (QMY55_23110) - 4944305..4945591 (-) 1287 WP_283486433.1 class I SAM-dependent RNA methyltransferase -
  QMY55_RS23115 (QMY55_23115) - 4945743..4946081 (+) 339 WP_283486434.1 tRNA-binding protein -
  QMY55_RS23120 (QMY55_23120) - 4946140..4946892 (+) 753 WP_283486435.1 tetratricopeptide repeat protein -
  QMY55_RS23125 (QMY55_23125) - 4947030..4947956 (+) 927 WP_283486436.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  QMY55_RS23130 (QMY55_23130) rpoN/rpoN1 4948028..4949623 (-) 1596 WP_283486437.1 RNA polymerase factor sigma-54 Machinery gene
  QMY55_RS23135 (QMY55_23135) lptB 4949797..4950582 (-) 786 WP_283486438.1 LPS export ABC transporter ATP-binding protein -
  QMY55_RS23140 (QMY55_23140) lptA 4950579..4951235 (-) 657 WP_283486439.1 lipopolysaccharide transport periplasmic protein LptA -
  QMY55_RS23145 (QMY55_23145) - 4951435..4952085 (-) 651 WP_283486440.1 thiol:disulfide interchange protein DsbA/DsbL -
  QMY55_RS23150 (QMY55_23150) - 4952260..4952970 (-) 711 WP_283486441.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58747.91 Da        Isoelectric Point: 4.6369

>NTDB_id=833648 QMY55_RS23130 WP_283486437.1 4948028..4949623(-) (rpoN/rpoN1) [Comamonas resistens strain ZM22]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLVDNPFLELDGDGPGTAAPDDIAAGARESNISDGYSSEKE
SERAQAASESIAEPSTNETPDSLNWEADGLDGQDGEWGGEASSEWDAPSASGSTRNRDDDEEVDAIDLARGHESLTDFLH
RQALSLHLGAEDTAALRFLIESLNDDGYLEESLQELAHSLAGDDLEEREELEQRFAIALKLLQSLEPVGVGARNLAECLQ
LQLRDLIRDAEDEGTTAAHINQLLLAQSICAQPLDLLARRDLRKLASLCGAREEALREAMALIARLEPRPGRRFVDLERQ
IVVPDVIVRPVRSSSGRVDFSVQLNPDVMPRLRVHDIYANALRRHKNSEGHAALQQRLQEARWFIKNIQQRFDTIQRVSE
AIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTFELKYFFGSGLGTETGGSASSTAVRALIK
QFVDAEDPKKPLSDAKLADMLKEQGIECARRTVAKYREQLKIPTTTLRKAL

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=833648 QMY55_RS23130 WP_283486437.1 4948028..4949623(-) (rpoN/rpoN1) [Comamonas resistens strain ZM22]
ATGAAGCCAGGACTCTCGCTACGTGTATCCCAGCATCTGTCGCTGACGCCGCAGCTGCAGCAATCGATTCAGCTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAAGTCGAGCAGATGCTGGTCGACAACCCGTTTCTGGAACTCGATGGTGATGGGC
CGGGCACAGCTGCTCCTGATGACATAGCTGCAGGCGCACGTGAGTCCAACATTTCAGATGGGTATTCATCCGAAAAAGAG
TCGGAAAGAGCGCAAGCAGCTTCTGAATCCATAGCGGAACCTTCCACCAACGAAACCCCGGACAGCCTGAACTGGGAGGC
CGACGGTCTGGATGGCCAGGATGGCGAATGGGGCGGCGAAGCCAGCAGCGAGTGGGATGCTCCCTCGGCCAGCGGCTCCA
CGCGCAACCGTGATGACGACGAAGAGGTCGATGCCATTGATCTGGCGCGCGGACATGAGAGCCTGACGGACTTTCTGCAC
CGCCAGGCGCTGAGCCTGCATCTGGGAGCCGAAGATACGGCGGCGCTGCGTTTTCTGATCGAGTCGTTGAACGACGATGG
CTATCTCGAAGAATCGCTGCAAGAGCTGGCACACAGTCTGGCGGGCGATGATCTGGAAGAGCGCGAAGAGCTGGAGCAGC
GCTTTGCCATCGCGCTCAAGCTGCTGCAAAGCCTAGAGCCCGTGGGCGTGGGCGCGCGCAATCTGGCCGAATGTCTGCAG
CTGCAGCTGCGCGATCTGATCCGCGATGCAGAGGACGAAGGCACGACAGCGGCGCATATCAACCAGCTGCTGCTGGCCCA
AAGCATTTGTGCGCAGCCCCTGGACCTGCTGGCGCGGCGCGATCTGCGCAAGCTGGCCAGCCTGTGCGGTGCGCGTGAAG
AGGCGCTGCGCGAGGCCATGGCCTTGATCGCCCGGCTGGAGCCGCGTCCCGGGCGCCGCTTTGTCGATCTGGAGCGCCAG
ATCGTGGTGCCCGATGTCATTGTGCGGCCGGTGCGTTCCAGCTCGGGCCGTGTCGACTTTTCCGTGCAGCTCAACCCCGA
TGTCATGCCCAGGCTGCGTGTGCACGACATCTATGCCAATGCGCTGCGCCGTCACAAGAACAGTGAAGGCCATGCCGCGC
TGCAGCAGCGCCTGCAGGAAGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTTGACACCATTCAGCGAGTGTCCGAA
GCCATCGTGGAGCGGCAGAAGAACTTCTTTGTGCATGGCGAGCTGGCCATGCGCCCGCTGGTGCTGCGCGATATTGCCGA
TGCCTTGGGCCTGCATGAGTCCACCATCAGCCGCGTGACCACGGCCAAATACATGGCCACGCCCCAGGGCACCTTCGAGC
TCAAATACTTCTTTGGCTCGGGACTGGGCACGGAAACCGGCGGCAGCGCGTCGAGCACGGCCGTGCGTGCGCTGATCAAG
CAGTTTGTCGACGCCGAGGACCCCAAGAAGCCGCTGTCGGACGCCAAGCTGGCCGATATGCTCAAGGAGCAGGGCATTGA
ATGCGCGCGCCGCACCGTGGCCAAGTACCGCGAGCAGCTCAAGATACCGACGACCACGTTGCGCAAGGCGCTGTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(373-529)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(148-358)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.844

100

0.51