Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QMY55_RS00555 Genome accession   NZ_CP125947
Coordinates   122150..123535 (-) Length   461 a.a.
NCBI ID   WP_283486785.1    Uniprot ID   -
Organism   Comamonas resistens strain ZM22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 117150..128535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY55_RS00530 (QMY55_00530) - 118208..118972 (+) 765 WP_283486781.1 glycosyltransferase family 25 protein -
  QMY55_RS00535 (QMY55_00535) - 118962..120047 (-) 1086 WP_283486782.1 glycosyltransferase -
  QMY55_RS00540 (QMY55_00540) - 120211..120420 (-) 210 WP_158383009.1 zinc-finger domain-containing protein -
  QMY55_RS00545 (QMY55_00545) - 120500..121438 (-) 939 WP_283486783.1 branched-chain amino acid transaminase -
  QMY55_RS00550 (QMY55_00550) - 121520..121975 (-) 456 WP_283486784.1 glycerate kinase -
  QMY55_RS00555 (QMY55_00555) radA 122150..123535 (-) 1386 WP_283486785.1 DNA repair protein RadA Machinery gene
  QMY55_RS00565 (QMY55_00565) - 123976..125259 (-) 1284 WP_283486786.1 Glu/Leu/Phe/Val dehydrogenase -
  QMY55_RS00570 (QMY55_00570) - 125445..126368 (+) 924 WP_283486787.1 fumarylacetoacetate hydrolase family protein -
  QMY55_RS00575 (QMY55_00575) - 126482..127393 (-) 912 WP_283489061.1 PPK2 family polyphosphate kinase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48111.41 Da        Isoelectric Point: 7.6659

>NTDB_id=833633 QMY55_RS00555 WP_283486785.1 122150..123535(-) (radA) [Comamonas resistens strain ZM22]
MAKDKTTYTCNACGGTSPRWLGKCPSCGAWNTLVETVADSSSGGKNRLSQPQGYAGLANAQPVTPLSAIEAQDVARTPSG
IEELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALHRIGLPTLYVTGEESGAQVALRSRRLGLDNSQVNVLAEIQL
EKILATVEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITIILVGHVTKDGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAARRLSVGLDRDRLAMLLAVLNRHAGVACADQDVFVNAVGGVRINEPAADLAVMLAITSSLRGKALPKGFIAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTIAIVPKANAPKKAIAGLTIHAVERVDEAMNIVRGIG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=833633 QMY55_RS00555 WP_283486785.1 122150..123535(-) (radA) [Comamonas resistens strain ZM22]
ATGGCCAAAGACAAAACCACCTATACCTGCAATGCCTGTGGCGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCCAGCTG
CGGCGCCTGGAACACCCTGGTTGAAACCGTGGCCGACTCGTCCTCGGGCGGCAAGAACCGCCTGAGCCAGCCCCAGGGCT
ATGCGGGCCTGGCCAATGCCCAGCCCGTCACCCCGCTGTCGGCCATCGAGGCCCAGGATGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCGTGGTCGAAGGCGGCGTGGTGCTGATCGGCGGCGACCCAGGAATAGG
TAAGTCCACACTTCTTTTACAAGCTATGGATGCCTTGCATCGCATTGGTCTGCCCACGCTCTATGTGACAGGCGAGGAAA
GCGGTGCCCAGGTGGCTTTGCGCTCGCGCCGACTGGGGCTGGACAACAGCCAGGTCAACGTGCTGGCCGAGATCCAGCTC
GAAAAAATCCTGGCCACCGTGGAGGCCACCCAGCCCGCCGTGGTGGTGATCGACTCGATCCAGACGGTGTATTCGGACCA
GCTTTCGTCGGCACCTGGCTCCGTGGCCCAGGTGCGCGAATGCGCGGCCCATCTGACGCGTGCGGCCAAAACCACGGGTA
TCACCATCATTTTGGTGGGCCATGTGACCAAGGACGGTGCGCTGGCCGGCCCGCGCGTGCTCGAGCATATGGTGGACACG
GTGCTCTACTTCGAAGGCGATACGCACAGCAACTTTCGCCTGGTGCGCGCCATCAAGAACCGTTTCGGAGCCGTCAATGA
AATCGGCGTCTTCGCGATGACGGAAAAAGGCCTCAAGGGCGTGACCAACCCCAGCGCCATCTTTCTGAGCCAGCACAGCG
AGCCCGTGCCTGGCAGCTGCGTGCTGGTGACGCTGGAGGGCACGCGGCCCATGCTGGTGGAAATCCAGGCTCTGGTGGAC
CAAGGCGGCCCCGCAGCTCGGCGGCTGTCCGTGGGCCTGGACCGCGACCGGCTGGCCATGCTGCTGGCCGTGCTCAACCG
CCATGCGGGCGTGGCCTGTGCCGATCAGGATGTATTCGTCAATGCCGTGGGCGGCGTACGTATCAACGAGCCTGCAGCTG
ATTTGGCAGTGATGTTGGCAATCACTTCAAGTCTTAGAGGCAAGGCCTTGCCCAAGGGCTTTATCGCCTTTGGCGAAGTC
GGCTTGGCCGGTGAGGTGCGCCCGGCTCCCCGCGGCCAGGAGCGCCTGAAGGAAGCAGCAAAGTTAGGATTCACTATCGC
CATCGTTCCCAAGGCCAATGCCCCCAAGAAAGCCATTGCCGGCCTGACCATTCATGCTGTGGAACGCGTGGACGAGGCCA
TGAATATCGTGCGCGGTATAGGTTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(364-455)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.268

100

0.484
  radA Streptococcus mitis NCTC 12261

47.38

99.349

0.471
  radA Streptococcus mitis SK321

48.322

96.963

0.469
  radA Streptococcus pneumoniae TIGR4

48.214

97.18

0.469
  radA Streptococcus pneumoniae R6

48.214

97.18

0.469
  radA Streptococcus pneumoniae Rx1

48.214

97.18

0.469
  radA Streptococcus pneumoniae D39

48.214

97.18

0.469