Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QM337_RS08220 Genome accession   NZ_CP125903
Coordinates   1688191..1688637 (-) Length   148 a.a.
NCBI ID   WP_123875322.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CHAL1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683191..1693637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM337_RS08190 (QM337_08190) gcvPA 1684117..1685463 (-) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QM337_RS08195 (QM337_08195) gcvT 1685483..1686574 (-) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  QM337_RS08200 (QM337_08200) - 1686733..1687257 (-) 525 WP_001015125.1 shikimate kinase -
  QM337_RS08205 (QM337_08205) - 1687247..1687393 (-) 147 WP_001789879.1 hypothetical protein -
  QM337_RS08210 (QM337_08210) comGF 1687490..1687987 (-) 498 WP_283531431.1 competence type IV pilus minor pilin ComGF Machinery gene
  QM337_RS08215 (QM337_08215) comGE 1687905..1688204 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QM337_RS08220 (QM337_08220) comGD 1688191..1688637 (-) 447 WP_123875322.1 competence type IV pilus minor pilin ComGD Machinery gene
  QM337_RS08225 (QM337_08225) comGC 1688615..1688926 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  QM337_RS08230 (QM337_08230) comGB 1688940..1690010 (-) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  QM337_RS08235 (QM337_08235) comGA 1689982..1690956 (-) 975 Protein_1617 competence type IV pilus ATPase ComGA -
  QM337_RS08240 (QM337_08240) - 1691008..1691631 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QM337_RS08245 (QM337_08245) - 1691628..1691957 (-) 330 WP_226452528.1 MTH1187 family thiamine-binding protein -
  QM337_RS08250 (QM337_08250) - 1691957..1692943 (-) 987 WP_000161314.1 ROK family glucokinase -
  QM337_RS08255 (QM337_08255) - 1692940..1693143 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17095.24 Da        Isoelectric Point: 10.3312

>NTDB_id=833600 QM337_RS08220 WP_123875322.1 1688191..1688637(-) (comGD) [Staphylococcus aureus strain CHAL1]
MEKQLQIRKQSAFTMIEMLVVIMLISIFLLLTLTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=833600 QM337_RS08220 WP_123875322.1 1688191..1688637(-) (comGD) [Staphylococcus aureus strain CHAL1]
ATGGAGAAGCAGTTGCAAATTAGAAAACAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATTATGTTAATCAGTAT
ATTTTTACTTTTGACATTGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAACTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

97.973

100

0.98
  comGD Staphylococcus aureus N315

97.973

100

0.98