Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R8568_RS00205 Genome accession   NZ_AP026931
Coordinates   38416..39186 (+) Length   256 a.a.
NCBI ID   WP_317640367.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701541     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 33416..44186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8568_RS00185 (PC1520_00300) - 35066..35503 (+) 438 WP_000076479.1 CoA-binding protein -
  R8568_RS00190 (PC1520_00310) - 35544..36062 (+) 519 WP_000692967.1 hypothetical protein -
  R8568_RS00195 (PC1520_00320) - 36091..37101 (-) 1011 WP_000009175.1 YeiH family protein -
  R8568_RS00200 (PC1520_00330) - 37250..38419 (+) 1170 WP_000366348.1 pyridoxal phosphate-dependent aminotransferase -
  R8568_RS00205 (PC1520_00340) recO 38416..39186 (+) 771 WP_317640367.1 DNA repair protein RecO Machinery gene
  R8568_RS00210 (PC1520_00350) plsX 39183..40175 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  R8568_RS00215 (PC1520_00360) - 40181..40414 (+) 234 WP_000136447.1 acyl carrier protein -
  R8568_RS00220 (PC1520_00370) - 40451..40750 (+) 300 Protein_36 transposase family protein -
  R8568_RS00225 (PC1520_00380) blpU 40953..41183 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  R8568_RS00230 - 41186..41311 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R8568_RS00235 (PC1520_00390) comA 41897..44050 (+) 2154 WP_000668304.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29777.31 Da        Isoelectric Point: 5.8959

>NTDB_id=83357 R8568_RS00205 WP_317640367.1 38416..39186(+) (recO) [Streptococcus pneumoniae strain PZ900701541]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCSEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=83357 R8568_RS00205 WP_317640367.1 38416..39186(+) (recO) [Streptococcus pneumoniae strain PZ900701541]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTTCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988