Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QMY49_RS01080 Genome accession   NZ_CP125875
Coordinates   212678..213196 (+) Length   172 a.a.
NCBI ID   WP_283312470.1    Uniprot ID   -
Organism   Vibrio harveyi strain SB1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 207678..218196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY49_RS01070 (QMY49_01070) gshA 210398..211966 (+) 1569 WP_017817672.1 glutamate--cysteine ligase -
  QMY49_RS01075 (QMY49_01075) - 211986..212591 (+) 606 WP_029790340.1 hypothetical protein -
  QMY49_RS01080 (QMY49_01080) luxS 212678..213196 (+) 519 WP_283312470.1 S-ribosylhomocysteine lyase Regulator
  QMY49_RS01085 (QMY49_01085) - 213289..214563 (-) 1275 WP_047512919.1 CNNM domain-containing protein -
  QMY49_RS01090 (QMY49_01090) - 214718..215512 (-) 795 WP_005446240.1 inner membrane protein YpjD -
  QMY49_RS01095 (QMY49_01095) ffh 215726..217108 (+) 1383 WP_005446242.1 signal recognition particle protein -
  QMY49_RS01100 (QMY49_01100) rpsP 217319..217567 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  QMY49_RS01105 (QMY49_01105) rimM 217596..218144 (+) 549 WP_005446245.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19070.80 Da        Isoelectric Point: 4.8563

>NTDB_id=833225 QMY49_RS01080 WP_283312470.1 212678..213196(+) (luxS) [Vibrio harveyi strain SB1]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTSPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=833225 QMY49_RS01080 WP_283312470.1 212678..213196(+) (luxS) [Vibrio harveyi strain SB1]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTTCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855