Detailed information NTG0833222

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMY49_RS00950
• Genome accession: NZ_CP125875
• Coordinates: 189948..190931 (+)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain SB1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 184948..195931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMY49_RS00915 (QMY49_00915)	ftsB	184954..185235 (+)	282	WP_005452106.1	cell division protein FtsB	-
QMY49_RS00920 (QMY49_00920)	ispD	185237..185947 (+)	711	WP_038899663.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QMY49_RS00925 (QMY49_00925)	ispF	185962..186438 (+)	477	WP_009698769.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMY49_RS00930 (QMY49_00930)	truD	186484..187527 (+)	1044	WP_152163045.1	tRNA pseudouridine(13) synthase TruD	-
QMY49_RS00935 (QMY49_00935)	surE	187527..188303 (+)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
QMY49_RS00940 (QMY49_00940)	-	188303..188929 (+)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QMY49_RS00945 (QMY49_00945)	-	188944..189867 (+)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
QMY49_RS00950 (QMY49_00950)	rpoS	189948..190931 (+)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
QMY49_RS00955 (QMY49_00955)	mutS	191025..193586 (-)	2562	WP_009698766.1	DNA mismatch repair protein MutS	-
QMY49_RS00960 (QMY49_00960)	pncC	193672..194154 (+)	483	WP_009703950.1	nicotinamide-nucleotide amidase	-
QMY49_RS00965 (QMY49_00965)	recA	194356..195399 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=833222 QMY49_RS00950 WP_005452115.1 189948..190931(+) (rpoS) [Vibrio harveyi strain SB1]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=833222 QMY49_RS00950 WP_005452115.1 189948..190931(+) (rpoS) [Vibrio harveyi strain SB1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856