Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QM316_RS14100 Genome accession   NZ_CP125862
Coordinates   2838228..2838944 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain 18-02202-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2833228..2843944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM316_RS14080 (QM316_14060) - 2834322..2835272 (+) 951 WP_000790321.1 LacI family DNA-binding transcriptional regulator -
  QM316_RS14085 (QM316_14065) - 2835421..2836905 (+) 1485 WP_000141423.1 sucrose-6-phosphate hydrolase -
  QM316_RS14090 (QM316_14070) - 2836902..2837861 (+) 960 WP_001253302.1 carbohydrate kinase -
  QM316_RS14095 (QM316_14075) - 2838049..2838156 (-) 108 WP_031927410.1 hypothetical protein -
  QM316_RS14100 (QM316_14080) agrA 2838228..2838944 (-) 717 WP_000688492.1 LytTR family DNA-binding domain-containing protein Regulator
  QM316_RS14105 (QM316_14085) - 2838963..2840255 (-) 1293 WP_001807128.1 GHKL domain-containing protein -
  QM316_RS14110 (QM316_14090) - 2840280..2840420 (-) 141 WP_001094303.1 cyclic lactone autoinducer peptide -
  QM316_RS14115 (QM316_14095) - 2840422..2840985 (-) 564 WP_001105716.1 accessory gene regulator AgrB -
  QM316_RS14120 (QM316_14100) hld 2841276..2841356 (+) 81 WP_000046023.1 delta-hemolysin -
  QM316_RS14125 (QM316_14105) - 2841954..2842739 (-) 786 WP_000867953.1 carbon-nitrogen family hydrolase -
  QM316_RS14130 (QM316_14110) - 2843100..2843726 (-) 627 Protein_2744 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=833123 QM316_RS14100 WP_000688492.1 2838228..2838944(-) (agrA) [Staphylococcus aureus strain 18-02202-1]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=833123 QM316_RS14100 WP_000688492.1 2838228..2838944(-) (agrA) [Staphylococcus aureus strain 18-02202-1]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGATCCA
GTTGGTAACATTATATTTGTTACGAGTCACAGTGAACTTACCTATTTAACTTTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCAAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCAGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1