Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   I3F59_RS20250 Genome accession   NZ_CP140097
Coordinates   4653353..4654411 (-) Length   352 a.a.
NCBI ID   WP_240136628.1    Uniprot ID   -
Organism   Streptomyces sp. MUM 178J     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4648353..4659411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3F59_RS20235 (I3F59_020235) - 4648419..4650050 (-) 1632 WP_240136630.1 ABC transporter substrate-binding protein -
  I3F59_RS20240 (I3F59_020240) - 4650798..4652021 (-) 1224 WP_240136629.1 N-acetylmuramoyl-L-alanine amidase -
  I3F59_RS20245 (I3F59_020245) - 4652246..4653360 (-) 1115 Protein_3995 dipeptide ABC transporter ATP-binding protein -
  I3F59_RS20250 (I3F59_020250) amiE 4653353..4654411 (-) 1059 WP_240136628.1 ABC transporter ATP-binding protein Regulator
  I3F59_RS20255 (I3F59_020255) - 4654423..4655391 (-) 969 WP_240136627.1 ABC transporter permease -
  I3F59_RS20260 (I3F59_020260) - 4655384..4656313 (-) 930 WP_240136626.1 ABC transporter permease -
  I3F59_RS20265 (I3F59_020265) - 4656443..4658062 (-) 1620 WP_240136625.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38407.36 Da        Isoelectric Point: 6.8278

>NTDB_id=833077 I3F59_RS20250 WP_240136628.1 4653353..4654411(-) (amiE) [Streptomyces sp. MUM 178J]
MTIIDKAAEAPAPRGAGENGHPLLQVRDLHVEFHTRDGVAKAVNGVNYTVDAGETLAVLGESGSGKSVTAQAIMGILDMP
PGRIPKGEILFRGEDMLTMSSDERRRLRGRKIAMIFQDALSSLNPVLSVGYQLGEMFRVHQGLSKKDAKAKAIELMDRVK
IPAARARVNDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMELLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHELYKRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLTRIPTGCAFNPRCPKADDLCRT
EIPALAPVTEQDGSELPGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=833077 I3F59_RS20250 WP_240136628.1 4653353..4654411(-) (amiE) [Streptomyces sp. MUM 178J]
ATGACCATCATCGACAAGGCCGCCGAGGCGCCCGCCCCGCGCGGCGCGGGCGAGAACGGCCATCCACTGCTGCAAGTCCG
CGACCTCCATGTGGAGTTCCACACCCGTGACGGCGTCGCCAAGGCCGTCAACGGCGTCAACTACACCGTGGACGCCGGAG
AGACGCTCGCCGTGCTCGGCGAGTCCGGCTCCGGCAAGTCCGTGACCGCGCAGGCGATCATGGGCATCCTCGACATGCCG
CCCGGACGCATCCCCAAGGGCGAGATCCTCTTCCGCGGCGAGGACATGCTCACCATGTCCTCGGACGAGCGGCGGCGGCT
CCGCGGCCGGAAGATCGCGATGATCTTCCAGGACGCGCTGTCCTCCCTCAACCCCGTGCTCTCCGTCGGCTATCAGCTCG
GCGAGATGTTCCGGGTGCACCAGGGCCTGTCCAAGAAGGACGCGAAGGCCAAGGCCATCGAGCTGATGGACCGGGTGAAG
ATCCCGGCCGCCAGGGCCCGGGTCAACGACTACCCGCACCAGTTCTCGGGCGGTATGCGTCAGCGCATCATGATCGCGAT
GGCGCTGGCTCTGGAGCCGGATCTGATCATCGCCGACGAGCCGACGACGGCGCTGGACGTGACCGTGCAGGCGCAGGTGA
TGGAGCTGCTCGCGGAGTTGCAGCGCGAGTACAACATGGGTCTGATCCTGATCACCCACGATCTGGGTGTGGTCGCGGAT
GTGGCCGACAAGATCGCGGTGATGTACGCGGGACGGATCGTGGAGACCGCCCCCGTACACGAGCTGTACAAGCGCCCGGC
GCACCCGTACACCCGCGGTCTGCTCGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTGTACGCGATCAAGGGCC
TGCCGCCCAACCTGACGCGCATCCCCACCGGCTGTGCGTTCAACCCGCGCTGCCCCAAGGCGGACGACCTCTGCCGTACC
GAGATCCCGGCGCTGGCGCCGGTGACCGAGCAGGACGGCAGTGAGCTGCCCGGCCGCGGAAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)

ABC transporter (ABC_tran)

(44-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

51.007

84.659

0.432
  amiE Streptococcus thermophilus LMG 18311

50.671

84.659

0.429
  amiE Streptococcus thermophilus LMD-9

50.671

84.659

0.429
  oppD Streptococcus mutans UA159

47.403

87.5

0.415