Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   I3F59_RS20220 Genome accession   NZ_CP140097
Coordinates   4645302..4646276 (-) Length   324 a.a.
NCBI ID   WP_240136633.1    Uniprot ID   -
Organism   Streptomyces sp. MUM 178J     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4640302..4651276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3F59_RS20200 (I3F59_020200) - 4641086..4642708 (+) 1623 WP_240136636.1 putative glycoside hydrolase -
  I3F59_RS20205 (I3F59_020205) - 4643084..4643302 (-) 219 WP_240136635.1 hypothetical protein -
  I3F59_RS20210 (I3F59_020210) - 4643477..4644028 (+) 552 WP_240136634.1 flavoprotein -
  I3F59_RS20215 (I3F59_020215) - 4644200..4645309 (-) 1110 WP_308295453.1 dipeptide ABC transporter ATP-binding protein -
  I3F59_RS20220 (I3F59_020220) amiE 4645302..4646276 (-) 975 WP_240136633.1 ABC transporter ATP-binding protein Regulator
  I3F59_RS20225 (I3F59_020225) - 4646291..4647238 (-) 948 WP_240136632.1 ABC transporter permease -
  I3F59_RS20230 (I3F59_020230) - 4647423..4648346 (-) 924 WP_240136631.1 ABC transporter permease -
  I3F59_RS20235 (I3F59_020235) - 4648419..4650050 (-) 1632 WP_240136630.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35782.50 Da        Isoelectric Point: 6.9063

>NTDB_id=833076 I3F59_RS20220 WP_240136633.1 4645302..4646276(-) (amiE) [Streptomyces sp. MUM 178J]
MLLEVRDLHVEFHTRDGVAKAVNGVNYTVEAGETLAVLGESGSGKSVTAQAVMGILDIPPGKIAGGEILFKGRDLLKLKE
DEWRKLRGSGMAMIFQDALSALNPVLTVGDQLGEMFTVHRGMSRKDARAKAVELMDRVRIPAARERVRQYPHQFSGGMRQ
RIMIAMALALEPDLIIADEPTTALDVTVQAQVMELLAELQREYNMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHD
IYKAPAHPYTRGLLESIPRLDQKGQELYAIKGLPPNLTRIPPGCAFNPRCPLARDVCRTDEPPLYEVSRTRRSACHFWEE
ALRG

Nucleotide


Download         Length: 975 bp        

>NTDB_id=833076 I3F59_RS20220 WP_240136633.1 4645302..4646276(-) (amiE) [Streptomyces sp. MUM 178J]
ATGCTGCTCGAAGTGCGCGATCTCCACGTGGAGTTCCATACGAGGGACGGCGTCGCCAAGGCCGTGAACGGCGTGAACTA
CACCGTGGAGGCGGGCGAGACGCTCGCCGTGCTCGGTGAGTCCGGGTCGGGCAAGTCCGTCACCGCTCAGGCCGTCATGG
GCATCCTCGACATCCCCCCGGGGAAGATCGCGGGCGGTGAGATCCTCTTCAAGGGCCGGGATCTGCTGAAGCTCAAGGAG
GACGAGTGGCGCAAGCTCCGCGGCTCGGGCATGGCCATGATCTTCCAGGACGCGCTGTCCGCGCTGAACCCGGTGCTGAC
CGTGGGGGACCAGCTCGGCGAGATGTTCACCGTGCACCGGGGCATGTCCCGCAAGGACGCGCGGGCGAAAGCGGTCGAGC
TGATGGACCGGGTGCGCATCCCGGCGGCCCGGGAGCGGGTGCGGCAGTATCCCCACCAGTTCTCGGGCGGTATGCGTCAG
CGCATCATGATCGCGATGGCGCTGGCTCTGGAGCCGGATCTGATCATCGCCGACGAGCCGACGACGGCGCTGGACGTGAC
CGTGCAGGCGCAGGTGATGGAGCTGCTCGCGGAGTTGCAGCGCGAGTACAACATGGGTCTGATCCTGATCACCCACGATC
TGGGTGTGGTCGCGGATGTGGCCGACAAGATCGCGGTGATGTACGCGGGACGGATCGTGGAGACCGCCCCCGTACACGAC
ATCTACAAGGCGCCCGCCCACCCCTACACCCGCGGACTGCTGGAGTCGATCCCCCGTCTGGACCAGAAGGGCCAGGAGCT
GTACGCGATCAAGGGTCTGCCGCCCAACCTGACGCGCATCCCGCCGGGGTGCGCCTTCAACCCGCGCTGCCCGCTGGCCC
GGGATGTGTGCCGCACCGACGAGCCTCCGCTGTACGAGGTCTCGAGGACCCGCAGAAGCGCCTGCCACTTCTGGGAGGAG
GCCCTCCGTGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.352

99.074

0.469
  oppD Streptococcus mutans UA159

47.771

96.914

0.463
  amiE Streptococcus thermophilus LMG 18311

46.729

99.074

0.463
  amiE Streptococcus thermophilus LMD-9

46.729

99.074

0.463