Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   I3F59_RS14205 Genome accession   NZ_CP140097
Coordinates   3246663..3247688 (+) Length   341 a.a.
NCBI ID   WP_240136087.1    Uniprot ID   -
Organism   Streptomyces sp. MUM 178J     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3241663..3252688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3F59_RS14190 (I3F59_014190) - 3242976..3244736 (+) 1761 WP_240136092.1 ABC transporter substrate-binding protein -
  I3F59_RS14195 (I3F59_014195) - 3244748..3245680 (+) 933 WP_240136090.1 ABC transporter permease -
  I3F59_RS14200 (I3F59_014200) - 3245677..3246663 (+) 987 WP_240136088.1 ABC transporter permease -
  I3F59_RS14205 (I3F59_014205) amiE 3246663..3247688 (+) 1026 WP_240136087.1 ABC transporter ATP-binding protein Regulator
  I3F59_RS14210 (I3F59_014210) - 3247685..3248656 (+) 972 WP_240136082.1 ABC transporter ATP-binding protein -
  I3F59_RS14215 (I3F59_014215) - 3248675..3249637 (-) 963 WP_240136080.1 hypothetical protein -
  I3F59_RS14220 (I3F59_014220) polX 3249710..3251431 (-) 1722 WP_240136078.1 DNA polymerase/3'-5' exonuclease PolX -
  I3F59_RS14225 (I3F59_014225) - 3251526..3251954 (+) 429 WP_240136076.1 archease -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36825.89 Da        Isoelectric Point: 6.5002

>NTDB_id=833058 I3F59_RS14205 WP_240136087.1 3246663..3247688(+) (amiE) [Streptomyces sp. MUM 178J]
MSESLPPDSLLSVRDLTVTFPTKHGPVRAVDSLSFEVRRGRTLGIVGESGSGKSVTSLAVLGLHANARVSGSVILDGQEL
TGRDERELNRLRGRRMAMIFQDPLSSLHPYYTVGEQIAEHHRVHFRSGRRAARARAVEALAEVGIPEPRRRAGEYPHQFS
GGMRQRVMIAMALACEPELLIADEPTTALDVTVQAQILELIARLQEQRGLAVVMITHDLGVVARVAHDVLVMYGGRAAEQ
APVDTLFASPAHPYTRALLDSLPRLDDDDDEPLRAIPGSPPSLLAPAPGCAFAPRCPRLAAASFDGERSRCETERPELDG
PTGPAGHPVACHFPAYEGISS

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=833058 I3F59_RS14205 WP_240136087.1 3246663..3247688(+) (amiE) [Streptomyces sp. MUM 178J]
ATGTCCGAGAGTTTGCCGCCCGACAGCCTGCTGTCCGTCAGGGATCTGACGGTCACCTTTCCGACGAAGCACGGGCCGGT
ACGGGCCGTGGACTCGCTCAGTTTCGAGGTGCGGCGGGGCCGCACGCTGGGCATCGTCGGCGAGTCGGGGTCGGGGAAGT
CCGTCACCTCGCTCGCCGTGCTGGGCCTGCATGCGAACGCCCGCGTCAGCGGCTCCGTCATCCTCGACGGACAGGAGCTG
ACCGGCAGGGACGAACGGGAGCTGAACCGGCTGCGGGGCCGCAGGATGGCGATGATCTTCCAGGATCCGCTCTCCAGCCT
GCACCCCTACTACACCGTCGGGGAGCAGATCGCCGAACACCACCGGGTCCACTTCCGCTCCGGCCGCAGAGCGGCCCGCG
CCCGGGCCGTCGAAGCCCTCGCCGAGGTCGGCATCCCCGAGCCCAGGCGCCGAGCGGGTGAGTATCCGCACCAGTTCTCC
GGCGGGATGCGCCAGCGAGTGATGATCGCGATGGCGCTGGCCTGCGAACCGGAGCTGCTCATCGCGGACGAGCCGACCAC
CGCCCTCGACGTCACCGTGCAGGCCCAGATCCTGGAGCTGATCGCCCGGCTCCAGGAGCAGCGGGGGCTCGCCGTCGTGA
TGATCACCCACGATCTGGGCGTGGTCGCCCGCGTCGCCCACGACGTGCTGGTGATGTACGGGGGCCGGGCGGCCGAACAA
GCTCCCGTGGACACGCTGTTCGCCTCCCCCGCCCATCCGTACACCCGCGCCCTGCTGGACTCGCTGCCGCGCCTCGACGA
CGACGATGACGAGCCGCTGCGGGCCATCCCCGGCAGCCCGCCCTCACTGCTCGCCCCGGCCCCCGGCTGTGCGTTCGCGC
CCCGCTGCCCGCGGCTGGCCGCCGCCTCCTTTGACGGCGAGCGGTCCCGCTGCGAGACCGAGCGCCCCGAGCTCGACGGA
CCGACCGGGCCGGCCGGGCATCCGGTGGCCTGCCACTTCCCCGCGTACGAAGGCATCAGCTCATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-298)

ABC transporter (ABC_tran)

(31-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.078

90.323

0.425
  amiE Streptococcus thermophilus LMG 18311

46.429

90.323

0.419
  amiE Streptococcus thermophilus LMD-9

46.429

90.323

0.419
  oppD Streptococcus mutans UA159

47.603

85.63

0.408