Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QM317_RS04880 Genome accession   NZ_CP125861
Coordinates   1017193..1017762 (-) Length   189 a.a.
NCBI ID   WP_000872864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 12-03119     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1012193..1022762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM317_RS04840 (QM317_04835) - 1012667..1013275 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  QM317_RS04845 (QM317_04840) rplL 1013450..1013818 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QM317_RS04850 (QM317_04845) rplJ 1013861..1014361 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  QM317_RS04855 (QM317_04850) rplA 1014633..1015325 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  QM317_RS04860 (QM317_04855) rplK 1015533..1015955 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  QM317_RS04865 (QM317_04860) nusG 1016136..1016684 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QM317_RS04870 (QM317_04865) secE 1016697..1016879 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QM317_RS04875 (QM317_04870) rpmG 1016935..1017078 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  QM317_RS04880 (QM317_04875) sigH 1017193..1017762 (-) 570 WP_000872864.1 RNA polymerase sigma factor Regulator
  QM317_RS04885 (QM317_04880) - 1017843..1018367 (-) 525 WP_000664738.1 NYN domain-containing protein -
  QM317_RS04890 (QM317_04885) rlmB 1018367..1019113 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QM317_RS04895 (QM317_04890) - 1019121..1019525 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QM317_RS04900 (QM317_04895) cysS 1019518..1020918 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  QM317_RS04905 (QM317_04900) cysE 1020902..1021549 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=833055 QM317_RS04880 WP_000872864.1 1017193..1017762(-) (sigH) [Staphylococcus aureus strain 12-03119]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLKPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNQLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=833055 QM317_RS04880 WP_000872864.1 1017193..1017762(-) (sigH) [Staphylococcus aureus strain 12-03119]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTAAAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATCAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974