Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I3F59_RS07970 Genome accession   NZ_CP140097
Coordinates   1787452..1789404 (+) Length   650 a.a.
NCBI ID   WP_240138150.1    Uniprot ID   -
Organism   Streptomyces sp. MUM 178J     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1782452..1794404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3F59_RS07955 (I3F59_007955) - 1783687..1783989 (+) 303 WP_240138153.1 YtxH domain-containing protein -
  I3F59_RS07960 (I3F59_007960) - 1784026..1785471 (+) 1446 WP_240138152.1 FGGY family carbohydrate kinase -
  I3F59_RS07965 (I3F59_007965) rcrP 1785713..1787455 (+) 1743 WP_240138151.1 ABC transporter ATP-binding protein Regulator
  I3F59_RS07970 (I3F59_007970) rcrQ 1787452..1789404 (+) 1953 WP_240138150.1 ABC transporter ATP-binding protein Regulator
  I3F59_RS07975 (I3F59_007975) - 1789462..1789686 (+) 225 WP_240138149.1 DUF3482 domain-containing protein -
  I3F59_RS07980 (I3F59_007980) - 1789748..1791079 (-) 1332 WP_240138148.1 RNA polymerase sigma factor -
  I3F59_RS07985 (I3F59_007985) dnaG 1791575..1793488 (-) 1914 WP_240138147.1 DNA primase -

Sequence

Protein


Download         Length: 650 a.a.        Molecular weight: 69795.06 Da        Isoelectric Point: 5.4109

>NTDB_id=833044 I3F59_RS07970 WP_240138150.1 1787452..1789404(+) (rcrQ) [Streptomyces sp. MUM 178J]
MSGPGGRMMAGGSPADRSLDFRGSAKRLLRALAPQRAALWTMLAAGLLSVAFSVIGPVILGRATDLVFAGVVGRSMDEGG
SKAGAIEELRERGDGGVADMLTAVDFVPGHGIDFAAVRDVLLAALAVYAAAGLLMLLATRMSVLVINRTVYRMREEVQAK
LERLPLAYFDRARRGEVLSRATNDIDNISQTLQQTMGQLVNSLLTIVGVLAMMFWISPLLALVALVTVPLSVWVATRVGK
RSQPHFVQQWKSTGRLNAHVEEMYTGHALVKVFGRQDESARAFAEQNEALYEAGFKAQFHSGVMQPLMFFVSNLNYVLVA
VVGGLRVASGALSIGDVQAFIQFSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQEPDAPALAAGARPVPERPAG
RVSFEHVAFRYEPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLLRFYEVTGGRIGLDGVDIAKIPREELRSGIGM
VLQDTWLFGGTIAENIAYGAAREVTREEIEAAARAAHADRFIRTLPDGYDTVVDDEGSSGSGVSAGEKQLITIARAFLSD
PVILVLDEATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTVRDADVILVMEHGSIVEQGTHDELLASDGAYARLYAA
QFAQAVTEVD

Nucleotide


Download         Length: 1953 bp        

>NTDB_id=833044 I3F59_RS07970 WP_240138150.1 1787452..1789404(+) (rcrQ) [Streptomyces sp. MUM 178J]
ATGAGCGGGCCGGGCGGACGGATGATGGCGGGCGGCTCTCCCGCCGACCGGTCCCTGGACTTCAGGGGGTCGGCCAAGCG
GCTGCTGCGGGCGCTGGCCCCGCAGCGGGCGGCGCTGTGGACGATGCTGGCGGCCGGACTGCTCAGCGTGGCGTTCTCGG
TGATCGGCCCGGTCATCCTGGGCCGGGCCACGGATCTGGTCTTCGCGGGCGTCGTCGGCCGGTCCATGGACGAGGGCGGC
AGCAAGGCCGGGGCGATCGAGGAGCTGCGCGAGCGCGGCGACGGCGGCGTCGCGGACATGCTGACGGCGGTGGACTTCGT
GCCGGGGCACGGCATCGACTTCGCCGCCGTACGCGATGTGCTGCTGGCCGCGCTGGCGGTGTACGCGGCCGCCGGGCTGC
TGATGCTGCTGGCCACCCGGATGTCGGTGCTGGTGATCAACCGGACCGTGTACCGGATGCGCGAGGAGGTCCAAGCGAAG
CTTGAGCGGCTGCCGCTTGCGTACTTCGACCGGGCCAGGCGCGGCGAGGTGCTCAGCCGGGCGACCAACGACATCGACAA
CATCTCGCAGACGCTTCAGCAGACGATGGGGCAGCTGGTCAACTCGCTGCTGACCATCGTGGGCGTGCTGGCGATGATGT
TCTGGATCTCGCCGCTGCTGGCGCTGGTCGCACTGGTCACGGTGCCGCTGTCGGTGTGGGTGGCCACCAGGGTCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGAAGTCCACGGGACGGCTCAACGCCCATGTGGAGGAGATGTACACCGGCCA
TGCACTGGTGAAGGTCTTCGGACGGCAGGACGAGTCGGCGCGGGCGTTCGCGGAGCAGAACGAGGCGCTGTACGAGGCGG
GGTTCAAGGCGCAGTTCCACAGCGGTGTCATGCAGCCGCTGATGTTCTTCGTGTCCAACCTGAACTATGTGCTGGTGGCG
GTCGTCGGCGGGCTGCGCGTGGCGTCGGGCGCGCTGTCCATCGGGGACGTCCAGGCCTTCATCCAGTTCTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTGGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCGGAGCGGGTCTTCGAGC
TGCTGGACGCGGAGGAGCAGGAGCCGGACGCGCCCGCGCTCGCGGCGGGCGCGCGGCCGGTTCCCGAAAGGCCCGCCGGG
AGGGTCTCGTTCGAGCATGTGGCCTTCCGCTACGAGCCGGAGAAGCCGCTCATCGAGGATCTGTCGCTCACCGTGGAGCC
GGGCCACACCGTGGCGATCGTCGGACCGACCGGCGCGGGCAAGACCACCCTGGTCAATCTGCTGCTGCGGTTCTACGAGG
TGACGGGCGGCCGGATCGGCCTGGACGGCGTGGACATCGCGAAGATCCCGCGCGAGGAGCTGCGCTCGGGCATCGGGATG
GTGCTCCAGGACACCTGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCGGCCCGGGAGGTCACCCGCGA
GGAGATCGAGGCGGCGGCGCGGGCGGCGCACGCGGACCGCTTCATCCGCACCCTGCCCGACGGCTACGACACCGTCGTCG
ACGACGAGGGCTCCTCCGGATCAGGGGTGAGCGCCGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTTCTGTCCGAC
CCGGTGATACTCGTCCTCGACGAGGCGACCAGCTCGGTCGACACCCGCACGGAGGTGCTGATCCAGAAGGCGATGGCGCG
GCTGGCCCACGGCCGCACCAGTTTTGTGATCGCACACCGGCTCTCCACCGTCCGGGACGCGGACGTGATCCTGGTGATGG
AGCACGGCTCGATCGTCGAACAGGGCACGCACGACGAGCTGCTGGCCTCCGACGGGGCGTATGCGCGGCTGTACGCGGCG
CAGTTCGCACAAGCGGTCACCGAGGTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-351)

ABC transporter (ABC_tran)

(419-571)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.269

96.769

0.38