Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   I3F59_RS07965 Genome accession   NZ_CP140097
Coordinates   1785713..1787455 (+) Length   580 a.a.
NCBI ID   WP_240138151.1    Uniprot ID   -
Organism   Streptomyces sp. MUM 178J     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1780713..1792455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3F59_RS07930 (I3F59_007930) - 1781113..1781670 (-) 558 WP_240138155.1 ABATE domain-containing protein -
  I3F59_RS07935 (I3F59_007935) - 1781756..1782628 (+) 873 WP_240138154.1 alpha/beta hydrolase -
  I3F59_RS07955 (I3F59_007955) - 1783687..1783989 (+) 303 WP_240138153.1 YtxH domain-containing protein -
  I3F59_RS07960 (I3F59_007960) - 1784026..1785471 (+) 1446 WP_240138152.1 FGGY family carbohydrate kinase -
  I3F59_RS07965 (I3F59_007965) rcrP 1785713..1787455 (+) 1743 WP_240138151.1 ABC transporter ATP-binding protein Regulator
  I3F59_RS07970 (I3F59_007970) rcrQ 1787452..1789404 (+) 1953 WP_240138150.1 ABC transporter ATP-binding protein Regulator
  I3F59_RS07975 (I3F59_007975) - 1789462..1789686 (+) 225 WP_240138149.1 DUF3482 domain-containing protein -
  I3F59_RS07980 (I3F59_007980) - 1789748..1791079 (-) 1332 WP_240138148.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 62512.63 Da        Isoelectric Point: 6.7048

>NTDB_id=833043 I3F59_RS07965 WP_240138151.1 1785713..1787455(+) (rcrP) [Streptomyces sp. MUM 178J]
MLIRILRTYLRPHRKPIALLAVLQLLQTSATLYLPTLNADIIDNGVVRGDTGHVLSVGALMAVVSVIQVACNVGAVYFGA
RTAAAVGRDVRADVFDRVQSFSAREMGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGVAVSLIVRRMRPLFRTMQERLDSVNQVLREQITGIRVIRAFVRDGYEKERFREANAELTGVSMSAARLMAL
MFPTVMTVVNVSSVAVVWFGAHRIDAGAMQIGSLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEQVLSTASSVVP
PAAPVRRLHGHGRLELRDVGFRYPGAEEPVLRGVGLLALPGETTAIIGSTGSGKSTLLGLVPRLFDATGGQVLVGGVDVR
DLDPELVARTVGLVPQKPYLFSGTVATNLRYGRPDASDQELWRALEAAQARDFVEALDGRLDAPVSQGGVNLSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALAAETAEATVVIVAQRVSTIRDADRIVVLDEGRVAASGTHEELMDPG
HGDDTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=833043 I3F59_RS07965 WP_240138151.1 1785713..1787455(+) (rcrP) [Streptomyces sp. MUM 178J]
GTGCTGATACGAATCCTGCGGACCTATCTGCGTCCGCACCGCAAGCCAATCGCCCTGCTGGCGGTGCTGCAGCTGCTGCA
GACCAGCGCCACCCTCTATCTGCCCACCCTCAACGCCGACATCATCGACAACGGTGTCGTACGCGGGGACACGGGCCATG
TGCTGAGCGTCGGCGCGCTGATGGCGGTCGTGAGCGTGATCCAGGTCGCCTGCAATGTGGGGGCGGTCTACTTCGGGGCG
CGCACCGCGGCCGCCGTAGGGCGGGATGTGCGGGCCGACGTCTTCGACCGGGTGCAGAGCTTTTCCGCCCGCGAGATGGG
GCACTTCGGCGCGCCGTCTCTGATCACCCGCACGACCAACGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGGCGTTCA
CGCTGATGGTCTCCGCTCCGATCATGTGCGTGGGCGGCATCGTGATGGCGCTCGGCCAGGATGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTTCCGGTGCTCGGCGTCGCGGTGTCGCTGATCGTGCGGCGGATGCGCCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACTCGGTGAACCAGGTGCTGCGCGAGCAGATCACCGGCATCCGAGTCATCCGCGCCTTCGTCCGCGACG
GCTACGAGAAGGAACGGTTCCGCGAGGCCAACGCCGAGCTGACCGGTGTCTCCATGTCCGCAGCACGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTCAACGTCTCGTCGGTCGCCGTCGTCTGGTTCGGGGCGCACCGGATCGACGCGGG
CGCGATGCAGATCGGTTCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCGGAGCGCATCGAGCAGGTGCTGTCGACCGCGTCGAGCGTCGTGCCG
CCCGCCGCGCCCGTGCGGCGTCTGCACGGCCACGGCCGGCTGGAGCTGCGGGACGTCGGCTTCCGCTACCCCGGCGCGGA
GGAGCCGGTGCTGCGCGGCGTCGGTCTGCTGGCCCTCCCCGGCGAGACGACCGCGATCATCGGCTCGACCGGCAGCGGCA
AGTCGACGCTGCTGGGACTGGTGCCGCGGCTGTTCGACGCGACCGGCGGGCAGGTGCTGGTCGGCGGGGTGGACGTACGC
GACCTTGACCCGGAGCTGGTGGCGCGGACCGTGGGTCTGGTGCCGCAGAAGCCGTATCTGTTCTCCGGCACCGTCGCGAC
GAATCTGCGGTACGGACGGCCCGACGCGAGCGACCAGGAGCTGTGGCGGGCGCTGGAGGCGGCGCAGGCGCGGGACTTCG
TCGAAGCGCTCGACGGGAGGCTGGACGCGCCCGTATCCCAGGGCGGCGTGAACCTCTCCGGCGGGCAGCGGCAGCGGCTG
GCGATCGCCAGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTGGACTACGCCACGGA
CGCGGCGCTGCGCCGGGCCCTGGCGGCCGAGACCGCGGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCCACCATCC
GCGACGCCGACCGGATCGTGGTCCTCGACGAGGGACGCGTCGCGGCAAGCGGGACGCACGAGGAGCTGATGGACCCCGGA
CACGGCGATGACACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(359-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.693

100

0.402