Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   QMY43_RS22065 Genome accession   NZ_CP125857
Coordinates   1330976..1332157 (+) Length   393 a.a.
NCBI ID   WP_005486564.1    Uniprot ID   A0AAW8PXL2
Organism   Vibrio parahaemolyticus strain G855     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1325976..1337157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY43_RS22050 (QMY43_22050) - 1326236..1328470 (+) 2235 WP_201452293.1 M9 family metallopeptidase -
  QMY43_RS22055 (QMY43_22055) - 1328650..1329387 (+) 738 WP_029799842.1 EAL domain-containing protein -
  QMY43_RS22060 (QMY43_22060) ylqF 1329677..1330621 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  QMY43_RS22065 (QMY43_22065) cqsA 1330976..1332157 (+) 1182 WP_005486564.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QMY43_RS22070 (QMY43_22070) cqsS 1332235..1334283 (-) 2049 WP_140104041.1 hybrid sensor histidine kinase/response regulator Regulator
  QMY43_RS22075 (QMY43_22075) - 1334603..1335220 (+) 618 WP_140104040.1 HAD family phosphatase -
  QMY43_RS22080 (QMY43_22080) - 1335307..1335855 (-) 549 WP_015313129.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43838.17 Da        Isoelectric Point: 6.4984

>NTDB_id=833034 QMY43_RS22065 WP_005486564.1 1330976..1332157(+) (cqsA) [Vibrio parahaemolyticus strain G855]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNLPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=833034 QMY43_RS22065 WP_005486564.1 1330976..1332157(+) (cqsA) [Vibrio parahaemolyticus strain G855]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCTCCAAACCTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCCGGAGCGCAGATTCATCCTTTCATGCATAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCATTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCTCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCGAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCACAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTATTTTGCCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578