Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QMY17_RS21945 Genome accession   NZ_CP125812
Coordinates   4108192..4108482 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain N3378-3At     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4103192..4113482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS21930 yabE 4103387..4104700 (-) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -
  QMY17_RS21935 dayD 4104856..4105623 (-) 768 WP_014478595.1 TatD family hydrolase -
  QMY17_RS21940 metG 4105703..4107697 (-) 1995 WP_014478594.1 methionine--tRNA ligase -
  QMY17_RS21945 abrB 4108192..4108482 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  QMY17_RS21950 rsmI 4108531..4109409 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QMY17_RS21955 yazA 4109384..4109683 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  QMY17_RS21960 trmNF 4109670..4110413 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QMY17_RS21965 yabA 4110472..4110831 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  QMY17_RS21970 ricT 4110846..4111673 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  QMY17_RS21975 holB 4111676..4112665 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  QMY17_RS21980 yaaR 4112677..4113117 (-) 441 WP_009966249.1 YaaR family protein -
  QMY17_RS21985 darA 4113130..4113459 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=832981 QMY17_RS21945 WP_003226760.1 4108192..4108482(+) (abrB) [Bacillus subtilis strain N3378-3At]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=832981 QMY17_RS21945 WP_003226760.1 4108192..4108482(+) (abrB) [Bacillus subtilis strain N3378-3At]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1