Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QMY17_RS20225 Genome accession   NZ_CP125812
Coordinates   3784021..3784470 (+) Length   149 a.a.
NCBI ID   WP_014475770.1    Uniprot ID   A0A0D1KPR3
Organism   Bacillus subtilis strain N3378-3At     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3779021..3789470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS20205 hxlR 3780235..3780597 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  QMY17_RS20210 hxlA 3780826..3781458 (+) 633 WP_014478804.1 3-hexulose-6-phosphate synthase -
  QMY17_RS20215 hxlB 3781464..3782021 (+) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  QMY17_RS20220 tlpC 3782132..3783853 (+) 1722 Protein_3962 methyl-accepting chemotaxis protein TlpC -
  QMY17_RS20225 nucA/comI 3784021..3784470 (+) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  QMY17_RS20230 nin/comJ 3784497..3784895 (+) 399 WP_014478800.1 DNA-entry nuclease inhibitor Regulator
  QMY17_RS20235 bglC 3784932..3786365 (-) 1434 WP_014478799.1 6-phospho-beta-glucosidase -
  QMY17_RS20240 - 3786438..3787182 (-) 745 Protein_3966 AAA family ATPase -
  QMY17_RS20245 - 3787201..3787521 (-) 321 WP_014478796.1 DUF3147 family protein -
  QMY17_RS20250 - 3787509..3787931 (-) 423 WP_014478795.1 MarR family winged helix-turn-helix transcriptional regulator -
  QMY17_RS20255 yckD 3788059..3788391 (-) 333 WP_014478794.1 YckD family protein -
  QMY17_RS20260 yckC 3788473..3788928 (-) 456 WP_014478793.1 RDD family protein -
  QMY17_RS20265 - 3788948..3789145 (-) 198 WP_121509395.1 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16440.39 Da        Isoelectric Point: 4.5282

>NTDB_id=832976 QMY17_RS20225 WP_014475770.1 3784021..3784470(+) (nucA/comI) [Bacillus subtilis strain N3378-3At]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=832976 QMY17_RS20225 WP_014475770.1 3784021..3784470(+) (nucA/comI) [Bacillus subtilis strain N3378-3At]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KPR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

98.658

100

0.987