Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   QMY17_RS17555 Genome accession   NZ_CP125812
Coordinates   3246687..3247481 (-) Length   264 a.a.
NCBI ID   WP_014479217.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3241687..3252481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS17520 ephM 3242530..3243390 (-) 861 WP_014479220.1 epoxide hydrolase EphM -
  QMY17_RS17525 spdL 3243377..3243709 (-) 333 WP_014479219.1 SdpC immunity protein SpdL -
  QMY17_RS17530 yfhK 3243794..3244312 (-) 519 WP_014479218.1 SH3 domain-containing protein -
  QMY17_RS17535 yfhJ 3244457..3244726 (-) 270 WP_003243789.1 YfhJ family protein -
  QMY17_RS17540 sspK 3244851..3245003 (+) 153 WP_003223241.1 small, acid-soluble spore protein K -
  QMY17_RS17545 yfhI 3245035..3246228 (-) 1194 WP_003243500.1 MFS transporter -
  QMY17_RS17550 yfhH 3246371..3246685 (-) 315 WP_003244592.1 YfhH family protein -
  QMY17_RS17555 recX 3246687..3247481 (-) 795 WP_014479217.1 recombination regulator RecX Regulator
  QMY17_RS17560 yfhF 3247570..3248481 (+) 912 WP_014479216.1 TIGR01777 family oxidoreductase -
  QMY17_RS17565 yfhE 3248536..3248646 (+) 111 WP_003223230.1 YfhE family protein -
  QMY17_RS17570 yfhD 3248712..3248903 (+) 192 WP_014479215.1 YfhD family protein -
  QMY17_RS17575 yfhC 3248942..3249526 (-) 585 WP_033881364.1 nitroreductase -
  QMY17_RS17580 yfhB 3249614..3250495 (-) 882 WP_014479213.1 PhzF family phenazine biosynthesis isomerase -
  QMY17_RS17585 sxzA 3250610..3251641 (-) 1032 WP_003233568.1 FecCD family ABC transporter permease -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31029.21 Da        Isoelectric Point: 6.6686

>NTDB_id=832971 QMY17_RS17555 WP_014479217.1 3246687..3247481(-) (recX) [Bacillus subtilis strain N3378-3At]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAIK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=832971 QMY17_RS17555 WP_014479217.1 3246687..3247481(-) (recX) [Bacillus subtilis strain N3378-3At]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATTAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992