Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QMY17_RS16370 Genome accession   NZ_CP125812
Coordinates   3035244..3035822 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain N3378-3At     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3030244..3040822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS16335 lepB 3030251..3030757 (-) 507 WP_003233128.1 signal peptidase I -
  QMY17_RS16340 yhjE 3030759..3031382 (-) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  QMY17_RS16345 - 3031534..3031905 (+) 372 WP_014476361.1 hypothetical protein -
  QMY17_RS16350 yhjC 3032104..3032304 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  QMY17_RS16355 yhjB 3032301..3033770 (+) 1470 WP_014479374.1 sodium:solute symporter family protein -
  QMY17_RS16360 yhjA 3033814..3034083 (-) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  QMY17_RS16365 yhxD 3034300..3035199 (+) 900 WP_014479372.1 SDR family oxidoreductase -
  QMY17_RS16370 comK 3035244..3035822 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  QMY17_RS16375 yhzC 3036115..3036348 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  QMY17_RS16380 yhxC 3036376..3037233 (-) 858 WP_014479371.1 SDR family oxidoreductase -
  QMY17_RS16385 comW 3037337..3038865 (+) 1529 Protein_3227 FAD-dependent oxidoreductase -
  QMY17_RS22505 - 3038920..3039546 (+) 627 Protein_3228 protoglobin domain-containing protein -
  QMY17_RS22510 - 3039787..3040302 (+) 516 WP_326255844.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=832967 QMY17_RS16370 WP_003245329.1 3035244..3035822(-) (comK) [Bacillus subtilis strain N3378-3At]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=832967 QMY17_RS16370 WP_003245329.1 3035244..3035822(-) (comK) [Bacillus subtilis strain N3378-3At]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1