Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   QMY17_RS15970 Genome accession   NZ_CP125812
Coordinates   2955294..2956247 (-) Length   317 a.a.
NCBI ID   WP_014479436.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2950294..2961247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS15940 appD 2950425..2951411 (-) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -
  QMY17_RS15945 yjaZ 2951603..2952388 (-) 786 WP_014479439.1 DUF2268 domain-containing protein -
  QMY17_RS15950 fabF 2952464..2953705 (-) 1242 WP_014479438.1 beta-ketoacyl-ACP synthase II -
  QMY17_RS15955 fabH 2953728..2954666 (-) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  QMY17_RS15960 yjzB 2954831..2955058 (+) 228 WP_031600361.1 spore coat protein YjzB -
  QMY17_RS15965 comZ 2955088..2955279 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  QMY17_RS15970 med 2955294..2956247 (-) 954 WP_014479436.1 transcriptional regulator Med Regulator
  QMY17_RS15975 - 2956338..2956895 (-) 558 WP_014479435.1 hypothetical protein -
  QMY17_RS15980 - 2956977..2957711 (-) 735 WP_014479433.1 hypothetical protein -
  QMY17_RS15985 yjzD 2957960..2958145 (+) 186 WP_003245236.1 YjzD family protein -
  QMY17_RS15990 yjzC 2958191..2958370 (-) 180 WP_003245356.1 YjzC family protein -
  QMY17_RS15995 - 2958548..2959698 (+) 1151 WP_087614160.1 IS3 family transposase -
  QMY17_RS16000 argF 2959746..2960705 (-) 960 WP_014479432.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.88 Da        Isoelectric Point: 4.6652

>NTDB_id=832964 QMY17_RS15970 WP_014479436.1 2955294..2956247(-) (med) [Bacillus subtilis strain N3378-3At]
MITRLVMIFSVLLLLSGCGKTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=832964 QMY17_RS15970 WP_014479436.1 2955294..2956247(-) (med) [Bacillus subtilis strain N3378-3At]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGAAAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTCCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.369

100

0.994