Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QMY17_RS14115 Genome accession   NZ_CP125812
Coordinates   2627444..2627722 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain N3378-3At     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2622444..2632722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS14095 ade 2622506..2624239 (-) 1734 WP_014479688.1 adenine deaminase -
  QMY17_RS14100 ktrC 2624394..2625059 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  QMY17_RS14105 ykqA 2625122..2625955 (-) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  QMY17_RS14110 kinC 2625971..2627254 (-) 1284 WP_014479686.1 two-component sensor histidine kinase KinC -
  QMY17_RS14115 abrB 2627444..2627722 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  QMY17_RS14120 mreBH 2628006..2629013 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  QMY17_RS14125 ykpC 2629114..2629248 (+) 135 WP_003238865.1 protein YkpC -
  QMY17_RS14130 ampS 2629357..2630589 (+) 1233 WP_003232341.1 aminopeptidase -
  QMY17_RS14135 panEB 2630623..2631534 (-) 912 WP_014479685.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=832953 QMY17_RS14115 WP_003244728.1 2627444..2627722(-) (abrB) [Bacillus subtilis strain N3378-3At]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=832953 QMY17_RS14115 WP_003244728.1 2627444..2627722(-) (abrB) [Bacillus subtilis strain N3378-3At]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576