Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QMY17_RS10730 Genome accession   NZ_CP125812
Coordinates   2009261..2009881 (-) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis strain N3378-3At     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2004261..2014881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS10710 dnaD 2004552..2005250 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  QMY17_RS10715 nth 2005269..2005928 (+) 660 WP_009967580.1 endonuclease III -
  QMY17_RS10720 ypoC 2005925..2006419 (+) 495 WP_009967579.1 YpoC family protein -
  QMY17_RS10725 ponA 2006495..2009239 (-) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  QMY17_RS10730 recU 2009261..2009881 (-) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  QMY17_RS10735 yppC 2009922..2010884 (+) 963 WP_033881326.1 DUF2515 domain-containing protein -
  QMY17_RS10740 sspM 2010909..2011013 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  QMY17_RS10745 yppD 2011212..2011457 (+) 246 WP_004398488.1 YppD family protein -
  QMY17_RS10750 yppE 2011503..2011874 (+) 372 WP_003246080.1 YppE family protein -
  QMY17_RS10755 yppF 2011913..2012101 (-) 189 WP_003230690.1 YppF family protein -
  QMY17_RS10760 sppG 2012288..2012665 (+) 378 WP_004398696.1 YppG family protein -
  QMY17_RS10765 ypqA 2012686..2013105 (-) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  QMY17_RS10770 ptsA 2013243..2013749 (+) 507 WP_029726788.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=832948 QMY17_RS10730 WP_014480105.1 2009261..2009881(-) (recU) [Bacillus subtilis strain N3378-3At]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=832948 QMY17_RS10730 WP_014480105.1 2009261..2009881(-) (recU) [Bacillus subtilis strain N3378-3At]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995