Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QMY17_RS09650 Genome accession   NZ_CP125812
Coordinates   1818231..1819034 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1813231..1824034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS09630 yqxC 1813341..1814186 (+) 846 WP_031600677.1 TlyA family RNA methyltransferase -
  QMY17_RS09635 argR 1814284..1814733 (+) 450 WP_003230265.1 arginine repressor ArgR -
  QMY17_RS09640 recN 1814770..1816500 (+) 1731 WP_014480229.1 DNA repair protein RecN Machinery gene
  QMY17_RS09645 spoIVB 1816675..1817955 (+) 1281 WP_014480228.1 SpoIVB peptidase -
  QMY17_RS09650 spo0A 1818231..1819034 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QMY17_RS09655 yqiG 1819499..1820617 (-) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  QMY17_RS09660 - 1820690..1820842 (-) 153 WP_014480226.1 hypothetical protein -
  QMY17_RS09665 - 1821150..1821446 (+) 297 WP_014480225.1 hypothetical protein -
  QMY17_RS09670 yqiI 1821466..1822086 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  QMY17_RS09675 glpQB 1822165..1822896 (+) 732 WP_014480224.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=832947 QMY17_RS09650 WP_003226427.1 1818231..1819034(+) (spo0A) [Bacillus subtilis strain N3378-3At]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=832947 QMY17_RS09650 WP_003226427.1 1818231..1819034(+) (spo0A) [Bacillus subtilis strain N3378-3At]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1