Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QMY17_RS09395 Genome accession   NZ_CP125812
Coordinates   1776458..1777495 (+) Length   345 a.a.
NCBI ID   WP_031600685.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1771458..1782495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS09370 rsbRD 1771678..1772514 (+) 837 WP_014480262.1 RsbT co-antagonist protein RsbRD -
  QMY17_RS09375 yqhB 1772567..1773895 (-) 1329 WP_014480261.1 hemolysin family protein -
  QMY17_RS09380 corA 1774037..1774990 (+) 954 WP_014480260.1 magnesium transporter CorA -
  QMY17_RS09385 - 1774992..1775189 (+) 198 WP_014480259.1 CBS domain-containing protein -
  QMY17_RS09390 comGA 1775401..1776471 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  QMY17_RS09395 comGB 1776458..1777495 (+) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  QMY17_RS09400 comGC 1777509..1777805 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  QMY17_RS09405 comGD 1777795..1778226 (+) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  QMY17_RS09410 comGE 1778210..1778557 (+) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  QMY17_RS09415 comGF 1778583..1778966 (+) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  QMY17_RS09420 comGG 1778967..1779341 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  QMY17_RS09425 spoIITA 1779412..1779591 (+) 180 WP_014480252.1 YqzE family protein -
  QMY17_RS09430 yqzG 1779633..1779959 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  QMY17_RS09435 tapA 1780231..1780992 (+) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  QMY17_RS09440 sipW 1780976..1781548 (+) 573 WP_003230181.1 signal peptidase I SipW -
  QMY17_RS09445 tasA 1781612..1782397 (+) 786 WP_014480250.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39592.99 Da        Isoelectric Point: 9.6259

>NTDB_id=832938 QMY17_RS09395 WP_031600685.1 1776458..1777495(+) (comGB) [Bacillus subtilis strain N3378-3At]
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTGSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKSVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSPFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=832938 QMY17_RS09395 WP_031600685.1 1776458..1777495(+) (comGB) [Bacillus subtilis strain N3378-3At]
ATGAAAAAGATTAGAAAAGTCTGGTCGTTAAAGGATCAAGCGAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGGTTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGTGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

99.071

93.623

0.928