Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QMY17_RS09115 Genome accession   NZ_CP125812
Coordinates   1726798..1727565 (+) Length   255 a.a.
NCBI ID   WP_014480292.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1721798..1732565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS09085 pgpH 1722094..1724229 (+) 2136 WP_014480296.1 cyclic-di-AMP phosphodiesterase PgpH -
  QMY17_RS09090 ybeY 1724230..1724703 (+) 474 WP_014480295.1 rRNA maturation RNase YbeY -
  QMY17_RS09095 unpK 1724684..1725055 (+) 372 WP_014480294.1 diacylglycerol kinase family protein -
  QMY17_RS09100 - 1725174..1725584 (+) 411 WP_014480293.1 cytidine deaminase -
  QMY17_RS09105 era 1725565..1726470 (+) 906 WP_003230051.1 GTPase Era -
  QMY17_RS09110 yqzL 1726618..1726761 (+) 144 WP_003230053.1 YqzL family protein -
  QMY17_RS09115 recO 1726798..1727565 (+) 768 WP_014480292.1 DNA repair protein RecO Machinery gene
  QMY17_RS09120 glyQ 1727862..1728749 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  QMY17_RS09125 glyS 1728742..1730781 (+) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  QMY17_RS09130 ccpN 1730914..1731552 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  QMY17_RS09135 ppsR 1731578..1732390 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=832936 QMY17_RS09115 WP_014480292.1 1726798..1727565(+) (recO) [Bacillus subtilis strain N3378-3At]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPLKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=832936 QMY17_RS09115 WP_014480292.1 1726798..1727565(+) (recO) [Bacillus subtilis strain N3378-3At]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAGAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGCTCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992