Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QMY17_RS07890 Genome accession   NZ_CP125812
Coordinates   1515309..1516055 (+) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1510309..1521055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS07875 - 1510536..1510727 (-) 192 WP_003222590.1 hypothetical protein -
  QMY17_RS07880 valS 1511175..1513817 (+) 2643 WP_014480461.1 valine--tRNA ligase -
  QMY17_RS07885 folC 1513877..1515169 (+) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  QMY17_RS07890 comC 1515309..1516055 (+) 747 WP_072592551.1 prepilin peptidase Machinery gene
  QMY17_RS07895 spoIIB 1516189..1517187 (+) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  QMY17_RS07900 maf 1517340..1517909 (+) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  QMY17_RS07905 radC 1517946..1518641 (+) 696 WP_014480455.1 RadC family protein -
  QMY17_RS07910 mreB 1518733..1519746 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  QMY17_RS07915 mreC 1519777..1520649 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=832928 QMY17_RS07890 WP_072592551.1 1515309..1516055(+) (comC) [Bacillus subtilis strain N3378-3At]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=832928 QMY17_RS07890 WP_072592551.1 1515309..1516055(+) (comC) [Bacillus subtilis strain N3378-3At]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996