Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U0027_RS07800 Genome accession   NZ_CP139997
Coordinates   1546583..1547674 (-) Length   363 a.a.
NCBI ID   WP_020012874.1    Uniprot ID   A0A822UZH2
Organism   Agrobacterium tumefaciens strain HAMBI 105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1541583..1552674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0027_RS07790 (U0027_07785) - 1542975..1543601 (+) 627 WP_003507880.1 glutathione S-transferase family protein -
  U0027_RS07795 (U0027_07790) alaS 1543689..1546352 (-) 2664 WP_060726339.1 alanine--tRNA ligase -
  U0027_RS07800 (U0027_07795) recA 1546583..1547674 (-) 1092 WP_020012874.1 recombinase RecA Machinery gene
  U0027_RS07805 (U0027_07800) - 1547921..1548862 (+) 942 WP_003507876.1 carbohydrate kinase family protein -
  U0027_RS07810 (U0027_07805) - 1548892..1549815 (+) 924 WP_060723296.1 pseudouridine-5'-phosphate glycosidase -
  U0027_RS07815 (U0027_07810) - 1549999..1552272 (-) 2274 WP_114835722.1 OmpA family protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38758.17 Da        Isoelectric Point: 4.9722

>NTDB_id=832928 U0027_RS07800 WP_020012874.1 1546583..1547674(-) (recA) [Agrobacterium tumefaciens strain HAMBI 105]
MAQNSLRLVEDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVEVETVSTGSLSLDIALGIGGLPKGRIVEIYGPES
SGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
AVKEREEVVGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFL
RDNPETANEIELALRQNAGLIADRFLQNGGPDAGEGDDGSDEG

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=832928 U0027_RS07800 WP_020012874.1 1546583..1547674(-) (recA) [Agrobacterium tumefaciens strain HAMBI 105]
ATGGCACAAAATTCTTTGCGTCTCGTAGAGGATAAATCGGTGGATAAAAGCAAGGCACTGGAAGCGGCGCTCTCCCAGAT
CGAACGGTCGTTCGGCAAGGGATCGATTATGAAGCTCGGTTCCAATGAAAATGTGGTTGAGGTGGAGACCGTTTCGACGG
GTTCTCTCAGCCTGGATATCGCGCTCGGCATCGGCGGTTTGCCGAAGGGGCGCATCGTTGAAATTTATGGCCCGGAAAGC
TCGGGTAAGACGACGCTGGCGCTGCAGACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTGGATGCCGA
GCACGCGCTCGATCCGGTCTATGCCCGCAAGCTTGGCGTGGATTTGCAGGGCCTTCTGATCTCGCAGCCGGATACGGGCG
AGCAGGCACTTGAGATCACCGATACGCTGGTGCGTTCCGGTGCGGTTGATGTCCTGGTGGTCGACTCCGTTGCGGCGCTG
ACGCCGCGGGCGGAAATCGAAGGTGAGATGGGCGACAGCCTGCCGGGTCTTCAGGCCCGCCTGATGAGCCAGGCGCTGCG
CAAGCTGACCGCTTCGATCTCCAAGTCGAAATGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGTGTCATGT
TCGGTTCGCCGGAAACGACGACAGGCGGTAACGCTCTCAAGTTCTATGCGTCCGTTCGCCTCGACATCCGCCGTATCGGC
GCCGTCAAGGAGCGCGAAGAGGTTGTCGGCAACCAGACCCGCGTCAAGGTCGTCAAGAACAAGATGGCTCCGCCCTTCAA
GCAGGTGGAATTCGACATCATGTATGGCGAGGGTGTTTCCAAGACCGGTGAACTCGTCGACCTCGGCGTAAAGGCCGGTA
TCGTCGAAAAATCCGGTGCATGGTTCTCCTATAACAGCCAGCGTCTGGGGCAGGGGCGTGAAAACGCCAAGACCTTCCTG
CGTGACAATCCGGAAACGGCAAATGAGATCGAACTGGCATTGCGCCAGAATGCCGGTCTGATCGCCGACCGCTTCCTGCA
GAATGGCGGCCCGGATGCCGGTGAAGGCGACGACGGCAGCGACGAAGGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822UZH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

72.05

88.705

0.639
  recA Acinetobacter baumannii D1279779

71.739

88.705

0.636
  recA Vibrio cholerae strain A1552

71.739

88.705

0.636
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.739

88.705

0.636
  recA Acinetobacter nosocomialis M2

71.429

88.705

0.634
  recA Glaesserella parasuis strain SC1401

67.055

94.49

0.634
  recA Ralstonia pseudosolanacearum GMI1000

72.93

86.501

0.631
  recA Pseudomonas stutzeri DSM 10701

70.405

88.43

0.623
  recA Neisseria gonorrhoeae strain FA1090

69.969

88.981

0.623
  recA Neisseria gonorrhoeae MS11

69.969

88.981

0.623
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.055

90.083

0.595
  recA Bacillus subtilis subsp. subtilis str. 168

65.644

89.807

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.443

90.083

0.59
  recA Staphylococcus aureus strain ATCC 12600

64.724

89.807

0.581
  recA Helicobacter pylori strain NCTC11637

64.417

89.807

0.579
  recA Helicobacter pylori 26695

64.11

89.807

0.576
  recA Streptococcus thermophilus LMG 18311

58.028

97.796

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.669

87.328

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

89.807

0.562
  recA Streptococcus mitis NCTC 12261

61.631

91.185

0.562
  recA Streptococcus mitis SK321

61.631

91.185

0.562
  recA Streptococcus pneumoniae Rx1

61.329

91.185

0.559
  recA Streptococcus pneumoniae R36A

61.329

91.185

0.559
  recA Streptococcus pneumoniae D39

61.329

91.185

0.559
  recA Streptococcus pneumoniae R6

61.329

91.185

0.559
  recA Streptococcus pneumoniae TIGR4

61.329

91.185

0.559
  recA Streptococcus thermophilus LMD-9

61.027

91.185

0.556
  recA Streptococcus mutans UA159

60.725

91.185

0.554
  recA Streptococcus pyogenes NZ131

60.486

90.634

0.548
  recA Lactococcus lactis subsp. cremoris KW2

59.459

91.736

0.545