Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LL063_RS07950 Genome accession   NZ_CP125808
Coordinates   1639966..1641765 (-) Length   599 a.a.
NCBI ID   WP_323616112.1    Uniprot ID   -
Organism   Erysipelothrix rhusiopathiae subsp. ohloneorum strain UCD-4724-06     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1634966..1646765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL063_RS07925 (LL063_07930) - 1635325..1636095 (+) 771 WP_123245108.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
  LL063_RS07930 (LL063_07935) - 1636088..1636906 (+) 819 WP_003775540.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  LL063_RS07935 (LL063_07940) - 1636971..1638848 (+) 1878 WP_323616110.1 BglG family transcription antiterminator -
  LL063_RS07940 (LL063_07945) - 1638919..1639521 (+) 603 WP_323616111.1 phospholipase -
  LL063_RS07945 (LL063_07950) - 1639518..1639910 (+) 393 WP_123171818.1 CoA-binding protein -
  LL063_RS07950 (LL063_07955) pepF 1639966..1641765 (-) 1800 WP_323616112.1 oligoendopeptidase F Regulator
  LL063_RS07985 (LL063_07990) - 1642846..1644054 (-) 1209 WP_003775547.1 O-antigen ligase family protein -
  LL063_RS07990 (LL063_07995) - 1644144..1644821 (-) 678 WP_003775548.1 hypothetical protein -
  LL063_RS07995 (LL063_08000) gatB 1644860..1646275 (-) 1416 WP_323616113.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68594.32 Da        Isoelectric Point: 4.3664

>NTDB_id=832903 LL063_RS07950 WP_323616112.1 1639966..1641765(-) (pepF) [Erysipelothrix rhusiopathiae subsp. ohloneorum strain UCD-4724-06]
MSDKYELPLRSEVDIKDTWDLTPMFKDDDAWNTEFDAIQNDLSEVAAYRGTLTKSAESLLAGLKFRDELSYRIEFLYVYA
HLSFDVDTTNPKYQAMNARVQSLLAQFGSSFSFYEAEILSADETVIREYLESNEALSLYNHEFDRLFKSRPHILSEKEER
ILASSGEIFGASSQTFGMLNNADIQFPTIKDESGNDVQLSHGRYSLLMESADRRVREDAFKAMQTTYGNLKNTLASTLSG
NVKVHNFNATIRNYASARQAALAANNIDEEVYDSLLEGIHNNINLLHDYVALREEALGIDDIQMYDIYVPMVDEVDLKFT
YEEAQEVILDALSVLGEEYCAVLKRAFDERWIDVVENKGKRSGAYSSGTYGSAPYILLNWQENIDNVFTLAHELGHSVHS
YFTRKYQPYIYGDYSIFVAEVASTTNENLLLNYLLDQYEDPKVRAYLLNHYLDTVKGTVFRQTQFAEFEHLIHKSDQEGV
ALTADYLIESYYKLNQFYYGESISTEEIGYEWARIPHFYYNYYVYQYATGFSAATLFSETIYNGGDATPYLDFLKSGSSD
YPINVLRKAGVDMTESTAVDTTLEKFGERMAELRTLLVK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=832903 LL063_RS07950 WP_323616112.1 1639966..1641765(-) (pepF) [Erysipelothrix rhusiopathiae subsp. ohloneorum strain UCD-4724-06]
ATGTCGGATAAATATGAATTACCACTTCGTAGTGAAGTGGATATAAAAGATACATGGGATTTAACACCGATGTTTAAAGA
TGATGACGCATGGAATACAGAATTTGATGCGATTCAAAATGACTTAAGTGAAGTGGCTGCATACCGTGGTACTTTAACGA
AAAGCGCTGAGAGTTTGTTAGCGGGTCTTAAGTTTCGTGATGAATTAAGTTATCGTATTGAGTTTTTATATGTTTATGCA
CATTTAAGTTTTGATGTCGATACCACAAACCCTAAGTATCAAGCAATGAATGCGCGCGTGCAATCGCTTCTTGCGCAATT
TGGATCAAGTTTTTCGTTCTATGAAGCAGAGATTTTATCTGCCGATGAAACTGTTATTCGAGAATATCTTGAATCGAATG
AAGCGCTCAGTTTATATAATCATGAATTTGATCGTCTTTTCAAATCAAGACCACATATTCTTAGTGAAAAAGAAGAACGT
ATTCTTGCCTCATCAGGAGAAATCTTTGGTGCTTCTTCGCAGACATTTGGCATGTTGAATAATGCAGATATTCAATTCCC
TACAATTAAAGATGAATCGGGAAATGATGTTCAATTATCACACGGTCGTTATTCACTGTTAATGGAAAGTGCAGATCGAC
GTGTTCGTGAAGATGCTTTCAAAGCGATGCAAACAACTTATGGTAATTTAAAGAATACTCTTGCAAGTACGCTGTCGGGA
AATGTTAAGGTTCATAATTTCAATGCAACAATCCGTAATTATGCGTCGGCTCGTCAAGCTGCTCTTGCCGCAAATAATAT
TGACGAAGAAGTTTATGATTCCCTTTTAGAAGGAATTCATAATAATATTAACTTACTGCATGATTATGTAGCCCTTCGTG
AAGAGGCATTGGGTATTGATGATATTCAAATGTATGATATTTATGTCCCAATGGTTGATGAAGTGGATTTGAAGTTTACA
TATGAGGAAGCACAAGAAGTGATCTTGGATGCATTGAGTGTTCTTGGAGAAGAATATTGTGCTGTGTTGAAACGTGCCTT
TGATGAACGCTGGATTGATGTTGTTGAGAATAAAGGAAAACGATCGGGAGCTTATTCTTCAGGTACTTATGGAAGTGCAC
CGTATATTCTTTTAAACTGGCAAGAAAATATAGATAATGTGTTTACTCTTGCTCATGAGCTTGGCCACAGTGTTCACTCG
TACTTTACGCGTAAGTATCAACCTTATATTTACGGAGATTATTCTATTTTTGTTGCTGAAGTTGCTTCCACAACGAATGA
GAATTTGCTGTTGAATTATTTGTTGGATCAATATGAGGATCCAAAGGTTCGTGCTTACTTGCTGAATCACTATTTAGACA
CGGTTAAAGGCACGGTGTTCCGTCAAACGCAGTTTGCTGAGTTTGAACACCTTATTCATAAATCAGACCAAGAGGGCGTT
GCTTTAACGGCTGATTATCTGATTGAATCTTACTACAAGCTCAATCAATTCTATTATGGTGAATCAATCAGCACTGAAGA
AATTGGTTATGAGTGGGCACGCATCCCTCATTTCTACTACAATTACTATGTTTACCAATATGCTACAGGATTTAGTGCAG
CAACTTTATTCAGTGAAACAATTTATAATGGTGGAGATGCGACACCTTATCTTGATTTCTTGAAGTCAGGAAGTTCGGAT
TATCCTATTAATGTCCTTCGTAAGGCGGGCGTGGATATGACTGAATCGACTGCTGTTGATACTACGCTTGAGAAATTTGG
CGAACGTATGGCTGAATTACGAACATTACTTGTAAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(206-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.241

98.998

0.487