Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U0533_RS22015 Genome accession   NZ_CP139953
Coordinates   4421700..4422329 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Nord1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4416700..4427329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0533_RS22000 (U0533_22000) helD 4416941..4418995 (-) 2055 WP_001550921.1 DNA helicase IV -
  U0533_RS22005 (U0533_22005) yccF 4419118..4419564 (+) 447 WP_001261235.1 YccF domain-containing protein -
  U0533_RS22010 (U0533_22010) yccS 4419574..4421737 (+) 2164 Protein_4280 YccS family putative transporter -
  U0533_RS22015 (U0533_22015) sxy/tfoX 4421700..4422329 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  U0533_RS22020 (U0533_22020) sulA 4422548..4423057 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  U0533_RS22025 (U0533_22025) ompA 4423415..4424467 (+) 1053 WP_000750418.1 porin OmpA -
  U0533_RS22030 (U0533_22030) matP 4424542..4424994 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  U0533_RS22035 (U0533_22035) ycbZ 4425180..4426940 (+) 1761 WP_000156479.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=832896 U0533_RS22015 WP_000839153.1 4421700..4422329(-) (sxy/tfoX) [Escherichia coli strain Nord1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=832896 U0533_RS22015 WP_000839153.1 4421700..4422329(-) (sxy/tfoX) [Escherichia coli strain Nord1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1