Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LLS04_RS05085 Genome accession   NZ_CP125807
Coordinates   1022634..1024433 (+) Length   599 a.a.
NCBI ID   WP_254007293.1    Uniprot ID   -
Organism   Erysipelothrix enhydrae strain UCD-4322-04     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1017634..1029433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLS04_RS05040 (LLS04_05040) gatB 1018116..1019531 (+) 1416 WP_323610598.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  LLS04_RS05045 (LLS04_05045) - 1019570..1020247 (+) 678 WP_323610600.1 hypothetical protein -
  LLS04_RS05050 (LLS04_05050) - 1020337..1021545 (+) 1209 WP_323610602.1 O-antigen ligase family protein -
  LLS04_RS05085 (LLS04_05085) pepF 1022634..1024433 (+) 1800 WP_254007293.1 oligoendopeptidase F Regulator
  LLS04_RS05090 (LLS04_05090) - 1024490..1024882 (-) 393 WP_323610603.1 CoA-binding protein -
  LLS04_RS05095 (LLS04_05095) - 1024879..1025481 (-) 603 WP_323610605.1 dienelactone hydrolase family protein -
  LLS04_RS05100 (LLS04_05100) - 1025552..1027429 (-) 1878 WP_323610606.1 BglG family transcription antiterminator -
  LLS04_RS05105 (LLS04_05105) - 1027494..1028312 (-) 819 WP_323610607.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  LLS04_RS05110 (LLS04_05110) - 1028305..1029075 (-) 771 WP_254007298.1 PTS sugar transporter subunit IIC -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68578.32 Da        Isoelectric Point: 4.3644

>NTDB_id=832893 LLS04_RS05085 WP_254007293.1 1022634..1024433(+) (pepF) [Erysipelothrix enhydrae strain UCD-4322-04]
MSDKYELPLRSEVDIKDTWDLTPMFKDDDAWNTEFDAIQNDLSEVAAYRGTLTKSAESLLAGLKFRDELSYRIEFLYVYA
HLSFDVDTTNPKYQAMNARVQSLLAQFGSSFSFYEAEILSADEAVIREYLESNDALSLYNHEFDRLFKSRPHILSEKEER
ILASSGEIFGVSSQTFGMLNNADIQFPTIKDESGNDVQLSHGRYSLLMESADRRVREDAFKAMQTTYGNLKNTLASTLSG
NVKVHNFNATIRNYASARQAALAANNIDEEVYDSLLEGIHNNINLLHDYVALREEALGIDDIQMYDIYVPMVDEVDLKFT
YEEAQEVILDALSVLGEEYCAVLKRAFDERWIDVVENKGKRSGAYSSGTYGSAPYILLNWQENIDNVFTLAHELGHSVHS
YFTRKYQPYIYGDYSIFVAEVASTTNENLLLNYLLDQYEDPKVRAYLLNHYLDTVKGTVFRQTQFAEFEHLIHKSDQEGV
ALTADYLIESYYKLNQFYYGESISTEEIGYEWARIPHFYYNYYVYQYATGFSAATLFSETIYNGGDATPYLDFLKSGSSD
YPINVLRKAGVDMTESTAVDTTLEKFGERMAELRTLLVK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=832893 LLS04_RS05085 WP_254007293.1 1022634..1024433(+) (pepF) [Erysipelothrix enhydrae strain UCD-4322-04]
ATGTCGGATAAATATGAATTACCACTTCGTAGTGAAGTGGATATAAAAGATACATGGGATTTAACACCGATGTTTAAAGA
TGATGACGCATGGAATACAGAATTTGATGCGATTCAAAATGACTTAAGTGAAGTGGCTGCATATCGTGGTACTTTAACGA
AAAGTGCTGAGAGTTTGTTAGCGGGTCTTAAGTTTCGTGATGAATTAAGTTATCGTATTGAGTTTTTATATGTTTATGCA
CATTTAAGTTTTGATGTCGATACCACAAACCCTAAGTATCAAGCTATGAATGCGCGCGTGCAATCGCTTCTTGCGCAATT
TGGATCGAGTTTTTCGTTCTACGAAGCAGAAATTTTATCTGCGGATGAAGCTGTGATACGGGAATATCTTGAATCGAATG
ATGCACTCAGTTTATATAATCATGAGTTTGATCGTCTTTTCAAATCAAGACCACATATTCTTAGTGAAAAAGAAGAACGT
ATTCTTGCCTCATCAGGAGAAATCTTTGGTGTTTCTTCGCAGACATTTGGTATGTTGAATAATGCAGATATTCAATTTCC
TACAATTAAAGATGAATCAGGAAATGATGTTCAATTATCACATGGACGTTATTCACTATTAATGGAAAGTGCAGATCGAC
GTGTTCGTGAAGATGCTTTCAAAGCGATGCAAACAACCTATGGTAATTTAAAGAATACGCTCGCAAGTACGCTGTCGGGA
AATGTTAAGGTTCATAATTTCAATGCAACAATCCGTAATTATGCATCGGCACGCCAGGCTGCTCTTGCTGCGAATAATAT
TGACGAAGAAGTTTATGATTCTTTATTAGAAGGAATCCATAATAATATTAATTTATTGCATGATTATGTTGCACTTCGTG
AAGAAGCCTTGGGTATTGATGATATTCAAATGTATGATATCTATGTTCCTATGGTCGATGAAGTGGATTTGAAGTTTACG
TATGAAGAAGCGCAAGAAGTGATCTTAGATGCATTGAGTGTTCTTGGAGAAGAATATTGTGCTGTGTTGAAACGTGCATT
TGATGAACGTTGGATTGATGTTGTTGAGAATAAAGGAAAACGTTCGGGTGCTTATTCTTCAGGTACTTATGGAAGTGCAC
CGTACATTCTTTTAAACTGGCAAGAAAATATTGATAATGTGTTTACACTTGCTCATGAACTTGGCCACAGTGTTCACTCA
TACTTTACACGTAAGTATCAACCTTATATTTATGGGGATTATTCAATTTTTGTTGCTGAGGTAGCTTCAACGACGAATGA
AAATTTATTGTTGAATTACTTGTTGGATCAATATGAGGATCCTAAGGTTCGTGCTTACTTGTTGAATCATTATTTAGACA
CCGTTAAGGGCACGGTGTTCCGTCAAACACAGTTTGCTGAGTTTGAACACCTTATTCATAAATCAGACCAAGAGGGCGTT
GCTTTAACGGCTGATTATTTAATTGAATCTTACTACAAACTTAATCAATTCTATTATGGTGAATCAATCAGCACCGAAGA
AATTGGTTATGAGTGGGCACGCATCCCTCATTTCTACTATAATTACTATGTATACCAATATGCTACAGGGTTTAGCGCAG
CAACTTTATTCAGTGAAACAATTTATAATGGTGGTGATGCGACACCTTATCTTGATTTCTTGAAGTCAGGAAGTTCTGAC
TATCCAATTAATGTCCTTCGTAAGGCAGGCGTGGATATGACTGAATCAACAGCAGTTGATACAACACTCGAGAAATTTGG
CGAACGTATGGCTGAATTACGAACACTACTTGTAAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(206-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.241

98.998

0.487