Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R8624_RS05450 Genome accession   NZ_AP026930
Coordinates   1075699..1077366 (-) Length   555 a.a.
NCBI ID   WP_317650025.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1070699..1082366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8624_RS05420 - 1070956..1071740 (-) 785 Protein_1072 IS5 family transposase -
  R8624_RS05425 (PC1195_10700) - 1071748..1072050 (-) 303 WP_050311845.1 PTS sugar transporter subunit IIB -
  R8624_RS05430 (PC1195_10710) - 1072088..1072564 (-) 477 Protein_1074 PTS sugar transporter subunit IIA -
  R8624_RS05435 (PC1195_10720) - 1072744..1072986 (+) 243 WP_050217251.1 hypothetical protein -
  R8624_RS05440 (PC1195_10730) lepA 1073067..1074890 (-) 1824 WP_001047204.1 translation elongation factor 4 -
  R8624_RS05445 (PC1195_10740) - 1074969..1075697 (-) 729 WP_050103764.1 metallophosphoesterase family protein -
  R8624_RS05450 (PC1195_10750) recN 1075699..1077366 (-) 1668 WP_317650025.1 DNA repair protein RecN Machinery gene
  R8624_RS05455 (PC1195_10760) - 1077373..1077804 (-) 432 WP_001034412.1 arginine repressor -
  R8624_RS05460 (PC1195_10770) - 1077797..1078612 (-) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  R8624_RS05465 (PC1195_10780) - 1078605..1079480 (-) 876 WP_050311668.1 polyprenyl synthetase family protein -
  R8624_RS05470 (PC1195_10790) - 1079477..1079689 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  R8624_RS05475 (PC1195_10800) xseA 1079667..1081007 (-) 1341 WP_000417467.1 exodeoxyribonuclease VII large subunit -
  R8624_RS05480 (PC1195_10810) udk 1081135..1081773 (-) 639 WP_001181378.1 uridine kinase -
  R8624_RS05485 (PC1195_10820) - 1081881..1082183 (-) 303 WP_000985093.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62697.15 Da        Isoelectric Point: 4.7062

>NTDB_id=83288 R8624_RS05450 WP_317650025.1 1075699..1077366(-) (recN) [Streptococcus pneumoniae strain PZ900701208]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHKLAQQLEAEIKQELQDLYMEKAQFQVHFSK
GKFSRGGNEIVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=83288 R8624_RS05450 WP_317650025.1 1075699..1077366(-) (recN) [Streptococcus pneumoniae strain PZ900701208]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGCCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAAATTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCATTTTAGTAAG
GGAAAATTCAGTCGTGGGGGAAATGAAATCGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment