Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   ULL23_RS22490 Genome accession   NZ_CP139891
Coordinates   4667272..4669101 (-) Length   609 a.a.
NCBI ID   WP_024186935.1    Uniprot ID   -
Organism   Escherichia coli strain ECO20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4662272..4674101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ULL23_RS22465 (ULL23_22470) bioP 4662991..4663890 (-) 900 WP_001196237.1 biotin transporter -
  ULL23_RS22470 (ULL23_22475) yigL 4663966..4664766 (-) 801 WP_000285360.1 sugar/pyridoxal phosphate phosphatase YigL -
  ULL23_RS22475 (ULL23_22480) pldB 4664774..4665796 (-) 1023 WP_001525959.1 lysophospholipase L2 -
  ULL23_RS22480 (ULL23_22485) rhtB 4665907..4666527 (+) 621 WP_000171710.1 homoserine/homoserine lactone efflux protein -
  ULL23_RS22485 (ULL23_22490) rhtC 4666588..4667208 (-) 621 WP_001525958.1 threonine export protein RhtC -
  ULL23_RS22490 (ULL23_22495) recQ 4667272..4669101 (-) 1830 WP_024186935.1 ATP-dependent DNA helicase RecQ Machinery gene
  ULL23_RS22495 (ULL23_22500) pldA 4669226..4670095 (-) 870 WP_001259692.1 phospholipase A -
  ULL23_RS22500 (ULL23_22505) yigI 4670260..4670727 (+) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  ULL23_RS22505 (ULL23_22510) rarD 4670779..4671666 (+) 888 WP_000339103.1 EamA family transporter RarD -
  ULL23_RS22510 (ULL23_22515) corA 4671795..4672745 (-) 951 WP_000947159.1 magnesium/cobalt transporter CorA -
  ULL23_RS22515 (ULL23_22520) ysgD 4672897..4672953 (-) 57 WP_211180520.1 protein YsgD -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68422.59 Da        Isoelectric Point: 7.0907

>NTDB_id=832734 ULL23_RS22490 WP_024186935.1 4667272..4669101(-) (recQ) [Escherichia coli strain ECO20]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGEIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPMLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=832734 ULL23_RS22490 WP_024186935.1 4667272..4669101(-) (recQ) [Escherichia coli strain ECO20]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGGGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAGATTATCGACACCGTACTTTCCGGTCGCGATTGCCTGGTCGTCATGCCCACTGGTGGCGGAAAAT
CCCTTTGCTATCAAATTCCTGCCTTACTGCTAAACGGTCTTACCGTGGTTGTTTCACCACTGATTTCGTTGATGAAAGAT
CAGGTGGATCAGCTACAGGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAGCAGCAGCTTGAAGT
AATGACAGGCTGCCGCACCGGGGAAATCCGCCTGCTGTATATCGCGCCGGAACGCCTGATGCTGGATAACTTCCTTGAGC
ATCTGGCGCACTGGAACCCGGTGTTATTAGCCGTTGATGAAGCCCACTGTATTTCCCAGTGGGGCCACGATTTCCGCCCG
GAATATGCCGCGCTCGGTCAGTTGCGCCAGCGTTTCCCGATGCTGCCGTTTATGGCGCTAACCGCCACCGCCGACGACAC
CACGCGCCAGGATATTGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATCAGCAGTTTTGACCGCCCGAACATTC
GCTACATGCTGATGGAGAAGTTCAAACCGCTCGATCAGTTGATGCGTTATGTACAGGAACAACGCGGTAAGTCGGGGATT
ATTTACTGTAACAGTCGTGCGAAAGTAGAGGATACCGCCGCGCGCCTGCAAAGTCGGGGAATTAGCGCGGCGGCCTATCA
TGCCGGGCTGGAGAATAATGTCCGCGCCGATGTGCAGGAAAAATTTCAGCGCGATGACCTGCAAATTGTGGTGGCGACGG
TGGCGTTCGGCATGGGCATCAACAAGCCGAACGTCCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTAT
TATCAGGAAACCGGTCGCGCTGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCGGATATGGCGTG
GCTGCGCCGTTGCCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGGCGCGT
TTGCTGAAGCGCAAACTTGCCGTCGTTTGGTATTGCTGAACTATTTTGGCGAAGGGCGTCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCAAAACAGTACGATGGTTCAACCGATGCGCAGATTGCCCTTTCCACCATTGGTCGTGTGAA
TCAGCGGTTTGGGATGGGTTATGTGGTGGAAGTGATTCGCGGTGCTAATAATCAGCGTATCCGCGACTATGGTCATGACA
AACTGAAAGTCTATGGCATGGGCCGTGATAAAAGCCATGAACATTGGGTGAGCGTGATCCGCCAGCTGATTCACCTCGGC
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCTGCGCGTCCGGTGCTGCGCGGCGAATCCTC
TTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGCAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCAACCTTGATTGAGATGGCGGAGCAGATGCCGATCACCGCCAGCGAAATGCTCAGCGTTAACGGCGTTGGTATGCGCAA
GCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTCGATGGTGACGACGAAGAGTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

DEAD/DEAH box helicase (DEAD)

(28-187)

HRDC domain (HRDC)

(533-599)

RQC domain (RQC)

(406-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.203

97.209

0.391