Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QLQ05_RS17850 Genome accession   NZ_CP125762
Coordinates   3314897..3315475 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain KRS015     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3309897..3320475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS17815 lepB 3309903..3310409 (-) 507 WP_003233128.1 signal peptidase I -
  QLQ05_RS17820 yhjE 3310411..3311034 (-) 624 WP_010886465.1 VTT domain-containing protein -
  QLQ05_RS17825 - 3311186..3311548 (+) 363 WP_003233132.1 hypothetical protein -
  QLQ05_RS17830 yhjC 3311756..3311956 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  QLQ05_RS17835 yhjB 3311953..3313422 (+) 1470 WP_003233134.1 sodium:solute symporter -
  QLQ05_RS17840 yhjA 3313465..3313734 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  QLQ05_RS17845 yhxD 3313951..3314850 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  QLQ05_RS17850 comK 3314897..3315475 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  QLQ05_RS17855 yhzC 3315768..3316001 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  QLQ05_RS17860 yhxC 3316029..3316886 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  QLQ05_RS17865 yhfW 3316998..3318527 (+) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  QLQ05_RS17870 hemAT 3318666..3319964 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=832733 QLQ05_RS17850 WP_003245329.1 3314897..3315475(-) (comK) [Bacillus subtilis strain KRS015]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=832733 QLQ05_RS17850 WP_003245329.1 3314897..3315475(-) (comK) [Bacillus subtilis strain KRS015]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1