Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QLQ05_RS15660 Genome accession   NZ_CP125762
Coordinates   2914437..2914715 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain KRS015     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2909437..2919715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS15640 ade 2909496..2911229 (-) 1734 WP_003245362.1 adenine deaminase -
  QLQ05_RS15645 ktrC 2911384..2912049 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  QLQ05_RS15650 ykqA 2912112..2912945 (-) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  QLQ05_RS15655 kinC 2912961..2914247 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  QLQ05_RS15660 abrB 2914437..2914715 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  QLQ05_RS15665 mreBH 2914999..2916006 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  QLQ05_RS15670 ykpC 2916107..2916241 (+) 135 WP_003238865.1 protein YkpC -
  QLQ05_RS15675 ampS 2916351..2917583 (+) 1233 WP_003232341.1 aminopeptidase -
  QLQ05_RS15680 - 2917617..2918528 (-) 912 WP_003245639.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=832719 QLQ05_RS15660 WP_003244728.1 2914437..2914715(-) (abrB) [Bacillus subtilis strain KRS015]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=832719 QLQ05_RS15660 WP_003244728.1 2914437..2914715(-) (abrB) [Bacillus subtilis strain KRS015]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576