Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QLQ05_RS10475 Genome accession   NZ_CP125762
Coordinates   1957016..1957636 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain KRS015     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1952016..1962636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS10455 dnaD 1952307..1953005 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  QLQ05_RS10460 nth 1953024..1953683 (+) 660 WP_009967580.1 endonuclease III -
  QLQ05_RS10465 ypoC 1953680..1954174 (+) 495 WP_009967579.1 YpoC family protein -
  QLQ05_RS10470 ponA 1954250..1956994 (-) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  QLQ05_RS10475 recU 1957016..1957636 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  QLQ05_RS10480 yppC 1957677..1958639 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  QLQ05_RS10485 sspM 1958664..1958768 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  QLQ05_RS10490 yppD 1958967..1959212 (+) 246 WP_004398488.1 YppD family protein -
  QLQ05_RS10495 yppE 1959258..1959629 (+) 372 WP_003246080.1 YppE family protein -
  QLQ05_RS10500 yppF 1959668..1959856 (-) 189 WP_003230690.1 YppF family protein -
  QLQ05_RS10505 yppG 1960044..1960421 (+) 378 WP_004398696.1 YppG family protein -
  QLQ05_RS10510 ypqA 1960442..1960861 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  QLQ05_RS10515 ypqE 1960999..1961505 (+) 507 WP_009967573.1 glucose PTS transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=832714 QLQ05_RS10475 WP_004399067.1 1957016..1957636(-) (recU) [Bacillus subtilis strain KRS015]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=832714 QLQ05_RS10475 WP_004399067.1 1957016..1957636(-) (recU) [Bacillus subtilis strain KRS015]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1