Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QLQ05_RS08960 Genome accession   NZ_CP125762
Coordinates   1688731..1689498 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain KRS015     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1683731..1694498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS08930 pgpH 1684027..1686162 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  QLQ05_RS08935 ybeY 1686163..1686636 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  QLQ05_RS08940 unpK 1686617..1686988 (+) 372 WP_004398824.1 diacylglycerol kinase family protein -
  QLQ05_RS08945 cdd 1687107..1687517 (+) 411 WP_003230049.1 cytidine deaminase -
  QLQ05_RS08950 era 1687498..1688403 (+) 906 WP_003230051.1 GTPase Era -
  QLQ05_RS08955 yqzL 1688551..1688694 (+) 144 WP_003230053.1 YqzL family protein -
  QLQ05_RS08960 recO 1688731..1689498 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  QLQ05_RS08965 glyQ 1689795..1690682 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  QLQ05_RS08970 glyS 1690675..1692714 (+) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  QLQ05_RS08975 ccpN 1692847..1693485 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  QLQ05_RS08980 ppsR 1693511..1694323 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=832702 QLQ05_RS08960 WP_003230055.1 1688731..1689498(+) (recO) [Bacillus subtilis strain KRS015]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=832702 QLQ05_RS08960 WP_003230055.1 1688731..1689498(+) (recO) [Bacillus subtilis strain KRS015]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1