Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ULL23_RS03920 Genome accession   NZ_CP139891
Coordinates   805781..806977 (-) Length   398 a.a.
NCBI ID   WP_001525618.1    Uniprot ID   -
Organism   Escherichia coli strain ECO20     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 800781..811977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ULL23_RS03900 (ULL23_03900) - 800833..802089 (+) 1257 WP_001525622.1 cytidylyltransferase domain-containing protein -
  ULL23_RS03905 (ULL23_03905) neuC 802086..803261 (+) 1176 WP_032144273.1 UDP-N-acetylglucosamine 2-epimerase -
  ULL23_RS03910 (ULL23_03910) - 803254..804402 (+) 1149 WP_001527662.1 DUF6716 putative glycosyltransferase -
  ULL23_RS03915 (ULL23_03915) - 804392..805621 (+) 1230 WP_001525619.1 alpha-2,8-polysialyltransferase family protein -
  ULL23_RS03920 (ULL23_03920) kpsS 805781..806977 (-) 1197 WP_001525618.1 capsule biosynthesis protein Regulator
  ULL23_RS03925 (ULL23_03925) - 807012..809039 (-) 2028 WP_045132852.1 capsular polysaccharide biosynthesis protein -
  ULL23_RS03930 (ULL23_03930) kdsB 809036..809776 (-) 741 WP_045132853.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ULL23_RS03935 (ULL23_03935) - 809786..811462 (-) 1677 WP_001606112.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 47323.64 Da        Isoelectric Point: 10.1173

>NTDB_id=832679 ULL23_RS03920 WP_001525618.1 805781..806977(-) (kpsS) [Escherichia coli strain ECO20]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYDLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGGNTKKTPT

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=832679 ULL23_RS03920 WP_001525618.1 805781..806977(-) (kpsS) [Escherichia coli strain ECO20]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCCTTTTTCAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCTGGTTGGTTGCGAGATCTCCACCGACAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTAGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGACTTAGGTGAGCGAGTCATATACGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATGGGGGGAACACAAAAAAAACGCCAACATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

97.739

0.389