Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   QMZ13_RS05610 Genome accession   NZ_CP125741
Coordinates   1058461..1059048 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter jejuni strain MS2212     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1053461..1064048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ13_RS05590 (QMZ13_05585) - 1054209..1054973 (+) 765 WP_002851318.1 TIGR02757 family protein -
  QMZ13_RS05595 (QMZ13_05590) - 1054977..1055741 (+) 765 WP_002855821.1 TSUP family transporter -
  QMZ13_RS05600 (QMZ13_05595) ctsF 1055734..1056915 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  QMZ13_RS05605 (QMZ13_05600) ctsE 1056912..1058471 (-) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene
  QMZ13_RS05610 (QMZ13_05605) ctsX 1058461..1059048 (-) 588 WP_002851370.1 membrane protein Machinery gene
  QMZ13_RS05615 (QMZ13_05610) ctsP 1059052..1059660 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  QMZ13_RS05620 (QMZ13_05615) ctsD 1059653..1061065 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMZ13_RS05625 (QMZ13_05620) ctsR 1061043..1061354 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=832660 QMZ13_RS05610 WP_002851370.1 1058461..1059048(-) (ctsX) [Campylobacter jejuni strain MS2212]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=832660 QMZ13_RS05610 WP_002851370.1 1058461..1059048(-) (ctsX) [Campylobacter jejuni strain MS2212]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1