Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   QMZ13_RS03455 Genome accession   NZ_CP125741
Coordinates   633098..633400 (+) Length   100 a.a.
NCBI ID   WP_002875928.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2212     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 628098..638400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ13_RS03430 (QMZ13_03425) rpsR 628461..628721 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  QMZ13_RS03435 (QMZ13_03430) lon 628781..631156 (-) 2376 WP_410497339.1 endopeptidase La -
  QMZ13_RS03440 (QMZ13_03435) - 631173..631820 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  QMZ13_RS03445 (QMZ13_03440) fliW 631981..632370 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  QMZ13_RS03450 (QMZ13_03445) proC 632370..633101 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  QMZ13_RS03455 (QMZ13_03450) ctsT 633098..633400 (+) 303 WP_002875928.1 hypothetical protein Machinery gene
  QMZ13_RS03460 (QMZ13_03455) - 633397..634059 (+) 663 WP_002858296.1 hypothetical protein -
  QMZ13_RS03465 (QMZ13_03460) - 634056..634508 (+) 453 WP_002859148.1 hypothetical protein -
  QMZ13_RS03470 (QMZ13_03465) hemD 634505..635134 (-) 630 WP_002869541.1 uroporphyrinogen-III synthase -
  QMZ13_RS03475 (QMZ13_03470) thiE 635112..635744 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  QMZ13_RS03480 (QMZ13_03475) thiD 635734..636546 (-) 813 WP_002869542.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QMZ13_RS03485 (QMZ13_03480) - 636543..637229 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  QMZ13_RS03490 (QMZ13_03485) - 637226..637987 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12161.32 Da        Isoelectric Point: 9.0653

>NTDB_id=832649 QMZ13_RS03455 WP_002875928.1 633098..633400(+) (ctsT) [Campylobacter jejuni strain MS2212]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFKRLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=832649 QMZ13_RS03455 WP_002875928.1 633098..633400(+) (ctsT) [Campylobacter jejuni strain MS2212]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTAAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

98

100

0.98