Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QMZ10_RS04510 Genome accession   NZ_CP125739
Coordinates   852205..853164 (-) Length   319 a.a.
NCBI ID   WP_042635877.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2202     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 847205..858164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ10_RS04480 (QMZ10_04485) ccoS 848162..848368 (+) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  QMZ10_RS04485 (QMZ10_04490) - 848391..848693 (-) 303 WP_002852762.1 c-type cytochrome -
  QMZ10_RS04490 (QMZ10_04495) gmhB 848774..849335 (+) 562 Protein_871 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  QMZ10_RS04495 (QMZ10_04500) rfaD 849336..850289 (+) 954 WP_052777643.1 ADP-glyceromanno-heptose 6-epimerase -
  QMZ10_RS04500 (QMZ10_04505) rfaE1 850282..851667 (+) 1386 WP_002884480.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  QMZ10_RS04505 (QMZ10_04510) gmhA 851664..852224 (+) 561 WP_052946651.1 D-sedoheptulose 7-phosphate isomerase -
  QMZ10_RS04510 (QMZ10_04515) waaF 852205..853164 (-) 960 WP_042635877.1 lipopolysaccharide heptosyltransferase II Regulator
  QMZ10_RS04515 (QMZ10_04520) waaV 853223..854035 (+) 813 WP_002918295.1 glycosyltransferase family 2 protein -
  QMZ10_RS04520 (QMZ10_04525) - 854093..854725 (-) 633 WP_042635876.1 CatB-related O-acetyltransferase -
  QMZ10_RS04525 (QMZ10_04530) - 854849..855514 (-) 666 WP_002935341.1 cytidylyltransferase domain-containing protein -
  QMZ10_RS04530 (QMZ10_04535) - 855511..855843 (-) 333 WP_087707738.1 hypothetical protein -
  QMZ10_RS04535 (QMZ10_04540) - 855917..856459 (-) 543 Protein_880 beta-1,4-N-acetylgalactosaminyltransferase -
  QMZ10_RS04540 (QMZ10_04545) neuC 856452..857576 (-) 1125 WP_002868604.1 UDP-N-acetylglucosamine 2-epimerase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36698.24 Da        Isoelectric Point: 10.3311

>NTDB_id=832635 QMZ10_RS04510 WP_042635877.1 852205..853164(-) (waaF) [Campylobacter jejuni strain MS2202]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFT
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENALSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide


Download         Length: 960 bp        

>NTDB_id=832635 QMZ10_RS04510 WP_042635877.1 852205..853164(-) (waaF) [Campylobacter jejuni strain MS2202]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGTAAAGAACTTGGTAAAATCGATCTTAGCTTTACT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACGCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(95-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.654

99.687

0.944