Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ULK21_RS14180 Genome accession   NZ_CP139887
Coordinates   2897976..2898605 (-) Length   209 a.a.
NCBI ID   WP_001524444.1    Uniprot ID   -
Organism   Escherichia coli strain ECO21     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2892976..2903605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ULK21_RS14165 (ULK21_14160) helD 2893218..2895272 (-) 2055 WP_001295938.1 DNA helicase IV -
  ULK21_RS14170 (ULK21_14165) yccF 2895395..2895841 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ULK21_RS14175 (ULK21_14170) yccS 2895851..2898013 (+) 2163 WP_001524445.1 YccS family putative transporter -
  ULK21_RS14180 (ULK21_14175) sxy/tfoX 2897976..2898605 (-) 630 WP_001524444.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ULK21_RS14185 (ULK21_14180) sulA 2898824..2899333 (+) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  ULK21_RS14190 (ULK21_14185) ompA 2899689..2900741 (+) 1053 WP_001346420.1 porin OmpA -
  ULK21_RS14195 (ULK21_14190) matP 2900817..2901269 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ULK21_RS14200 (ULK21_14195) ycbZ 2901455..2903215 (+) 1761 WP_000156502.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24190.10 Da        Isoelectric Point: 9.0428

>NTDB_id=832624 ULK21_RS14180 WP_001524444.1 2897976..2898605(-) (sxy/tfoX) [Escherichia coli strain ECO21]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=832624 ULK21_RS14180 WP_001524444.1 2897976..2898605(-) (sxy/tfoX) [Escherichia coli strain ECO21]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99